SUBSTRATA MAIN PAGE


Subdoligranulum

RANK: Genus

TAXONOMY: Bacteria -> Terrabacteria group -> Firmicutes -> Clostridia -> Clostridiales -> Ruminococcaceae -> Subdoligranulum

OVERVIEW:

Cells are coccoid in shape but may show some pleomorphism. Gram-stain-negative. Nonmotile and nonspore-forming. Strictly anaerobic; no growth occurs in 2% oxygen. Cells do not survive heating at 80°C for 10 min. Catalase-negative. Glucose and some other carbohydrates are fermented. The major acid products formed in PYG broth are butyric and lactic acids together with minor amounts of acetic and succinic acids. Cells are indole-negative and nitrate is not reduced to nitrite. Esculin is hydrolyzed, but starch is not. Lecithinase-, urease-, and lipase-negative. Based on 16S rRNA gene sequence and phylogenetic analysis, this genus belongs to the Clostridium leptum rRNA super cluster (cluster IV). Isolated from human feces. A 16S rRNA-derived probe, Svariab_645: 5′-TGCACTACTCAAGGCCAG-3′, has been designed that specifically detects this genus by in situ hybridization to human fecal samples. DNA G+C content (mol%): 52.2. Type species: Subdoligranulum variabile

This genus contains microbial species that can reside in the human gastrointestinal tract. [PMC 4262072]



Microbial Abundance Data: Subdoligranulum
(Percent of total population with standard deviation [PMID: 22698087])
Group 1
Group 2
Group 3
Group 4
Group 1 Avg
Buccal
Mucosa
Keratinized
Gingiva
Hard
Palate
Group 2 Avg
Throat
Throat
Tonsils
Saliva
Group 3 Avg
Supragingival
Plaque
Subgingival
Plaque
Stool
0.003 %
(0.013)
0.002 %
(0.008)
0.001 %
(0.006)
0.005 %
(0.024)
0.003 %
(0.016)
0.004 %
(0.013)
0.004 %
(0.023)
0.001 %
(0.009)
0.003 %
(0.018)
0.002 %
(0.012)
0.000 %
(0.001)
0.003 %
(0.023)
1.427 %
(2.268)
TAGS
Keystone
Core species
Type species
Pathogen
Dysbiosis associated
Flora/ commensal
Gut associated
Probiotic
Leanness
Obesity
Skin microbiome
Fecal distribution
Oral microbiome
Vaginal microbiome
Butyrate producer
Catalase producer
Histamine producer
Food fermenter
Amylolytic
Propionate producer
Nitrifying
Biofilm producer
DESCENDANTS
INTERACTIONS
ENHANCES
  • Anaerostipes
  • Bacteroidales
  • Bacteroides
  • Odoribacter
  • Peptococcaceae

  • INHIBITS
  • Bifidobacterium
  • Coriobacteriales
  • Adlercreutzia
  • Collinsella
  • Porphyromonas
  • Prevotella
  • Clostridium
  • Clostridiales incertae sedis
  • Clostridiales Family XIII. Incertae Sedis
  • Blautia
  • Coprococcus
  • Dorea
  • Lachnospiraceae
  • Ruminococcaceae
  • Ruminococcus
  • Dialister
  • Campylobacteraceae
  • Erysipelotrichaceae

  • INHIBITED BY
  • Bifidobacterium
  • Coriobacteriales
  • Adlercreutzia
  • Collinsella
  • Bacteroidales
  • Bacteroides
  • Porphyromonadaceae
  • Odoribacter
  • Parabacteroides
  • Porphyromonas
  • Prevotella
  • Rikenellaceae
  • Alistipes
  • Turicibacter
  • Streptococcus
  • Clostridiales
  • Catabacteriaceae
  • Clostridium
  • Clostridiales incertae sedis
  • Peptoniphilus
  • Clostridiales Family XIII. Incertae Sedis
  • Lachnospiraceae
  • Blautia
  • Lachnospiraceae
  • Coprococcus
  • Dorea
  • Eubacterium
  • Lachnobacterium
  • Lachnospira
  • Roseburia
  • Lachnospiraceae
  • Peptococcaceae
  • Ruminococcaceae
  • Ruminiclostridium
  • Acetivibrio
  • Eubacterium
  • Faecalibacterium
  • Oscillospira
  • Ruminococcus
  • Acidaminococcus
  • Dialister
  • Phascolarctobacterium
  • Veillonella
  • Rubrivivax
  • Alcaligenaceae
  • Oxalobacter
  • Bilophila
  • Desulfovibrio
  • Campylobacteraceae
  • Enterobacteriaceae
  • Escherichia
  • Erysipelotrichaceae
  • Erysipelotrichaceae
  • Holdemania
  • Akkermansia
  • KEGG PATHWAYS

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