Datapunk Opus23 | Deinococcus

Deinococcus

RANK: Genus

TAXONOMY: Bacteria -> Terrabacteria group -> Deinococcus-Thermus -> Deinococci -> Deinococcales -> Deinococcaceae -> Deinococcus

OVERVIEW:

Deinococcus strains form either spherical cells 0.5–3.5 µm in diameter, or rods 0.6–1.2 µm wide × 1.5–4.0 µm long. Spherical cells form pairs or tetrads and appear larger than other cocci. Species are mesophilic or thermophilic, with optimum growth temperatures of 25–35°C or 45–50°C, respectively. With the exception of D. grandis, all species stain Gram-positive. Nonmotile, without a differentiated resting stage. Aerobic, catalase is produced. Several distinct cell wall layers are visible by electron microscopy of sections and an outer membrane is included. The peptidoglycan is type A3β and contains l-ornithine. Menaquinone 8 (MK-8) is the predominant respiratory quinone. The phospholipids do not include phosphatidylglycerol, diphosphatidylglycerol, or derivatives. Fatty acids are saturated or monounsaturated. Unbranched 15, 16, and 17 carbon acids predominate in mesophilic species, branched 16 and 17 carbon acids in thermophilic species. Chemoorganotrophic; metabolism is respiratory. May be proteolytic. All natural isolates are ionizing-radiation resistant. The habitat of the mesophilic species is not defined, thermophilic species are found in hot springs.

The mol% G + C of the DNA is: 62–70.

Type species: Deinococcus radiodurans

This genus contains microbial species that can reside in the human gastrointestinal tract. [PMC 4262072]

Microbial Abundance Data: Deinococcus (Percent of total population with standard deviation [PMID: 22698087])
Group 1				Group 2					Group 3			Group 4
Group 1 Avg	Buccal Mucosa	Keratinized Gingiva	Hard Palate	Group 2 Avg	Throat	Throat	Tonsils	Saliva	Group 3 Avg	Supragingival Plaque	Subgingival Plaque	Stool
0.001 % (0.012)	0.002 % (0.022)	0.000 % (0.002)	0.001 % (0.010)	0.001 % (0.007)	0.002 % (0.019)	0.000 % (0.002)	0.000 % (0.000)	0.001 % (0.008)	0.001 % (0.010)	0.000 % (0.000)	0.002 % (0.020)	0.000 % (0.000)

TAGS

Keystone	Core species	Type species	Pathogen	Dysbiosis associated	Flora/ commensal	Gut associated	Probiotic
Leanness	Obesity	Skin microbiome	Fecal distribution	Oral microbiome	Vaginal microbiome	Butyrate producer	Catalase producer
Histamine producer	Food fermenter	Amylolytic	Propionate producer	Nitrifying

DESCENDANTS 'Deinococcus soli' Cha et al. 2014 'Deinococcus soli' Zhang et al. 2011 Deinococcus actinosclerus Deinococcus aeria Deinococcus aerius Deinococcus aerolatus Deinococcus aerophilus Deinococcus aetherius Deinococcus alpinitundrae Deinococcus altitudinis Deinococcus antarcticus Deinococcus apachensis Deinococcus aquaticus Deinococcus aquatilis Deinococcus aquiradiocola Deinococcus aquivivus Deinococcus caeni Deinococcus cellulosilyticus Deinococcus citri Deinococcus claudionis Deinococcus daejeonensis Deinococcus depolymerans Deinococcus deserti Deinococcus enclensis Deinococcus ficus Deinococcus frigens Deinococcus geothermalis Deinococcus gobiensis Deinococcus grandis Deinococcus hohokamensis Deinococcus hopiensis Deinococcus humi Deinococcus indicus Deinococcus maricopensis Deinococcus marmoris Deinococcus metalli Deinococcus misasensis Deinococcus murrayi Deinococcus navajonensis Deinococcus papagonensis Deinococcus peraridilitoris Deinococcus phoenicis Deinococcus pimensis Deinococcus piscis Deinococcus proteolyticus Deinococcus puniceus Deinococcus radiodurans Deinococcus radiomollis Deinococcus radiophilus Deinococcus radiopugnans Deinococcus radiotolerans Deinococcus reticulitermitis Deinococcus roseus Deinococcus sahariens Deinococcus saxicola Deinococcus sonorensis Deinococcus sp. Deinococcus swuensis Deinococcus wulumuqiensis Deinococcus xinjiangensis Deinococcus yavapaiensis Deinococcus yunweiensis environmental samples	INTERACTIONS	KEGG PATHWAYS 2-Oxocarboxylic acid metabolism ABC transporters Acarbose and validamycin biosynthesis Alanine, aspartate and glutamate metabolism Amino sugar and nucleotide sugar metabolism Aminoacyl-tRNA biosynthesis Aminobenzoate degradation Arginine and proline metabolism Arginine biosynthesis Ascorbate and aldarate metabolism Bacterial secretion system Base excision repair Benzoate degradation Biosynthesis of amino acids Biosynthesis of antibiotics Biosynthesis of secondary metabolites Biosynthesis of unsaturated fatty acids Biotin metabolism Butanoate metabolism C5-Branched dibasic acid metabolism Caprolactam degradation Carbapenem biosynthesis Carbon metabolism Carotenoid biosynthesis Cationic antimicrobial peptide (CAMP) resistance Chloroalkane and chloroalkene degradation Citrate cycle (TCA cycle) Cyanoamino acid metabolism Cysteine and methionine metabolism D-Alanine metabolism D-Glutamine and D-glutamate metabolism DNA replication Degradation of aromatic compounds Fatty acid biosynthesis Fatty acid degradation Fatty acid metabolism Folate biosynthesis Fructose and mannose metabolism Galactose metabolism Geraniol degradation Glutathione metabolism Glycerolipid metabolism Glycerophospholipid metabolism Glycine, serine and threonine metabolism Glycolysis / Gluconeogenesis Glyoxylate and dicarboxylate metabolism Histidine metabolism Homologous recombination Inositol phosphate metabolism Limonene and pinene degradation Lipoic acid metabolism Lysine biosynthesis Lysine degradation Metabolic pathways Methane metabolism Microbial metabolism in diverse environments Mismatch repair Monobactam biosynthesis Nicotinate and nicotinamide metabolism Nitrogen metabolism Novobiocin biosynthesis Nucleotide excision repair One carbon pool by folate Oxidative phosphorylation Pantothenate and CoA biosynthesis Pentose phosphate pathway Peptidoglycan biosynthesis Phenylalanine metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Phosphonate and phosphinate metabolism Polyketide sugar unit biosynthesis Porphyrin and chlorophyll metabolism Propanoate metabolism Protein export Purine metabolism Pyrimidine metabolism Pyruvate metabolism Quorum sensing00253 RNA degradation RNA polymerase Riboflavin metabolism Ribosome Selenocompound metabolism Starch and sucrose metabolism Streptomycin biosynthesis Styrene degradation Sulfur metabolism Sulfur relay system Synthesis and degradation of ketone bodies Taurine and hypotaurine metabolism Terpenoid backbone biosynthesis Thiamine metabolism Tryptophan metabolism Two-component system Tyrosine metabolism Ubiquinone and other terpenoid-quinone biosynthesis Valine, leucine and isoleucine biosynthesis Valine, leucine and isoleucine degradation Vancomycin resistance Vitamin B6 metabolism Xylene degradation alpha-Linolenic acid metabolism beta-Alanine metabolism beta-Lactam resistance CLUSTERS WITH	METABOLOMICS NUTRIENTS/ SUBSTRATES ENDPRODUCTS INHIBITED BY ENHANCED BY BIOTRANSFORMS BIOTRANFORM
ANTIBIOTIC RESISTANCE	BIOFILM FORMERS Deinococcus geothermalis	COGEM PATHOGENICITY

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