Datapunk Opus23 | Sphingomonas

Sphingomonas

RANK: Genus

TAXONOMY: cellular organisms -> Bacteria -> Proteobacteria -> Alphaproteobacteria -> Sphingomonadales -> Sphingomonadaceae -> Sphingomonas

OVERVIEW:

This genus contains microbial species that can reside in the human gastrointestinal tract. [PMC 4262072]

Microbial Abundance Data: Sphingomonas (Percent of total population with standard deviation [PMID: 22698087])
Group 1				Group 2					Group 3			Group 4
Group 1 Avg	Buccal Mucosa	Keratinized Gingiva	Hard Palate	Group 2 Avg	Throat	Throat	Tonsils	Saliva	Group 3 Avg	Supragingival Plaque	Subgingival Plaque	Stool
0.005 % (0.023)	0.004 % (0.027)	0.002 % (0.010)	0.008 % (0.032)	0.010 % (0.065)	0.012 % (0.039)	0.002 % (0.009)	0.000 % (0.002)	0.027 % (0.211)	0.001 % (0.006)	0.001 % (0.004)	0.002 % (0.008)	0.004 % (0.041)

TAGS

Keystone	Core species	Type species	Pathogen	Dysbiosis associated	Flora/ commensal	Gut associated	Probiotic
Leanness	Obesity	Skin microbiome	Fecal distribution	Oral microbiome	Vaginal microbiome	Butyrate producer	Catalase producer
Histamine producer	Food fermenter	Amylolytic	Propionate producer	Nitrifying

DESCENDANTS 'Rhizomonas' sp. 'Sphingomonas ginsengisoli' Hoang et al. 2012 Sphingomonas abaci Sphingomonas adhaesiva Sphingomonas aerolata Sphingomonas aerophila Sphingomonas aestuarii Sphingomonas alpina Sphingomonas anadarae Sphingomonas aquaticus Sphingomonas aquatilis Sphingomonas asaccharolytica Sphingomonas astaxanthinifaciens Sphingomonas aurantiaca Sphingomonas azotifigens Sphingomonas azotofornans Sphingomonas bosoensis Sphingomonas canadensis Sphingomonas changbaiensis Sphingomonas cynarae Sphingomonas daechungensis Sphingomonas desiccabilis Sphingomonas dokdonensis Sphingomonas echinoides Sphingomonas elodea Sphingomonas endophytica Sphingomonas faeni Sphingomonas fennica Sphingomonas formosensis Sphingomonas gei Sphingomonas gimensis Sphingomonas ginsengisoli An et al. 2013 Sphingomonas ginsenosidimutans Sphingomonas ginsenosidivorax Sphingomonas glacialis Sphingomonas guangdongensis Sphingomonas haloaromaticamans Sphingomonas hankookensis Sphingomonas hankyongensis Sphingomonas hengshuiensis Sphingomonas histidinilytica Sphingomonas humi Sphingomonas hunanensis Sphingomonas hylomeconis Sphingomonas indica Sphingomonas insulae Sphingomonas japonica Sphingomonas jaspsi Sphingomonas jejuensis Sphingomonas jinjuensis Sphingomonas kaistensis Sphingomonas koreensis Sphingomonas kwangyangensis Sphingomonas kyeonggiensis Sphingomonas kyungheensis Sphingomonas laterariae Sphingomonas leidyi Sphingomonas mali Sphingomonas mathurensis Sphingomonas melonis Sphingomonas metalli Sphingomonas molluscorum Sphingomonas morindae Sphingomonas mucosissima Sphingomonas naasensis Sphingomonas oligoaromativorans Sphingomonas oligophenolica Sphingomonas oryziterrae Sphingomonas panacis Sphingomonas panni Sphingomonas parapaucimobilis Sphingomonas parvus Sphingomonas paucimobilis Sphingomonas phyllosphaerae Sphingomonas pituitosa Sphingomonas polyaromaticivorans Sphingomonas pruni Sphingomonas pseudosanguinis Sphingomonas rhizogenes Sphingomonas rosea Sphingomonas roseiflava Sphingomonas rubra Sphingomonas sanguinis Sphingomonas sanxanigenens Sphingomonas sediminicola Sphingomonas soli Sphingomonas sp. Sphingomonas sp. 24T Sphingomonas sp. 540 Sphingomonas sp. CCGE4098 Sphingomonas sp. DS-3PS-11 Sphingomonas sp. HJ-JR3 Sphingomonas sp. MM62(2011) Sphingomonas sp. MN 18.3a Sphingomonas sp. PDD-26b-16 Sphingomonas sp. Zn3 Sphingomonas sp. oral taxon 003 Sphingomonas sp. oral taxon 004 Sphingomonas sp. oral taxon 006 Sphingomonas sp. oral taxon 007 Sphingomonas sp.TP11-2 Sphingomonas starnbergensis Sphingomonas swuensis Sphingomonas taxi Sphingomonas trueperi Sphingomonas ursincola Sphingomonas wittichii Sphingomonas xinjiangensis Sphingomonas yabuuchiae Sphingomonas yantingensis Sphingomonas yunnanensis environmental samples unclassified Sphingomonas	INTERACTIONS	KEGG PATHWAYS 2-Oxocarboxylic acid metabolism ABC transporters Acarbose and validamycin biosynthesis Alanine, aspartate and glutamate metabolism Amino sugar and nucleotide sugar metabolism Aminoacyl-tRNA biosynthesis Aminobenzoate degradation Arachidonic acid metabolism Arginine and proline metabolism Arginine biosynthesis Ascorbate and aldarate metabolism Bacterial chemotaxis Bacterial secretion system Base excision repair Benzoate degradation Biosynthesis of amino acids Biosynthesis of antibiotics Biosynthesis of secondary metabolites Biosynthesis of unsaturated fatty acids Biotin metabolism Butanoate metabolism C5-Branched dibasic acid metabolism Carbapenem biosynthesis Carbon metabolism Carotenoid biosynthesis Cationic antimicrobial peptide (CAMP) resistance Chloroalkane and chloroalkene degradation Chlorocyclohexane and chlorobenzene degradation Citrate cycle (TCA cycle) Cyanoamino acid metabolism Cysteine and methionine metabolism D-Alanine metabolism D-Glutamine and D-glutamate metabolism DNA replication Degradation of aromatic compounds Dioxin degradation Fatty acid biosynthesis Fatty acid degradation Fatty acid metabolism Flagellar assembly Fluorobenzoate degradation Folate biosynthesis Fructose and mannose metabolism Furfural degradation Galactose metabolism Geraniol degradation Glutathione metabolism Glycerolipid metabolism Glycerophospholipid metabolism Glycine, serine and threonine metabolism Glycolysis / Gluconeogenesis Glyoxylate and dicarboxylate metabolism Histidine metabolism Homologous recombination Inositol phosphate metabolism Limonene and pinene degradation Lipoic acid metabolism Lipopolysaccharide biosynthesis Lysine biosynthesis Lysine degradation Metabolic pathways Methane metabolism Microbial metabolism in diverse environments Mismatch repair Monobactam biosynthesis Naphthalene degradation Nicotinate and nicotinamide metabolism Nitrogen metabolism Nitrotoluene degradation Non-homologous end-joining Novobiocin biosynthesis Nucleotide excision repair One carbon pool by folate Oxidative phosphorylation Pantothenate and CoA biosynthesis Penicillin and cephalosporin biosynthesis Pentose and glucuronate interconversions Pentose phosphate pathway Peptidoglycan biosynthesis Phenazine biosynthesis Phenylalanine metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Phosphonate and phosphinate metabolism Phosphotransferase system (PTS) Polyketide sugar unit biosynthesis Porphyrin and chlorophyll metabolism Propanoate metabolism Protein export Purine metabolism Pyrimidine metabolism Pyruvate metabolism Quorum sensing00253 RNA degradation RNA polymerase Riboflavin metabolism Ribosome Secondary bile acid biosynthesis Selenocompound metabolism Starch and sucrose metabolism Steroid degradation Streptomycin biosynthesis Styrene degradation Sulfur metabolism Sulfur relay system Synthesis and degradation of ketone bodies Taurine and hypotaurine metabolism Terpenoid backbone biosynthesis Thiamine metabolism Toluene degradation Tryptophan metabolism Two-component system Tyrosine metabolism Ubiquinone and other terpenoid-quinone biosynthesis Valine, leucine and isoleucine biosynthesis Valine, leucine and isoleucine degradation Vancomycin resistance Vitamin B6 metabolism Xylene degradation alpha-Linolenic acid metabolism beta-Alanine metabolism beta-Lactam resistance CLUSTERS WITH	METABOLOMICS NUTRIENTS/ SUBSTRATES ENDPRODUCTS INHIBITED BY ENHANCED BY BIOTRANSFORMS BIOTRANFORM
ANTIBIOTIC RESISTANCE	BIOFILM FORMERS Sphingomonas wittichii	COGEM PATHOGENICITY Sphingomonas sp PAMC 26621 (2) Sphingomonas sp PAMC 26617 (2) Sphingomonas sp Mn802worker (2) Sphingomonas sp S17 (2) Sphingomonas sp SKA58 (2) Sphingomonas sp PR090111 T3T 6A (2) Sphingomonas sp PAMC 26605 (2)

OPUS 23™ IS A REGISTERED TRADEMARK ® OF DATAPUNK BIOINFORMATICS, LLC. COPYRIGHT © 2015-2023. ALL RIGHTS RESERVED. |