Datapunk Opus23 | Photobacterium

Photobacterium

RANK: Genus

TAXONOMY: cellular organisms -> Bacteria -> Proteobacteria -> Gammaproteobacteria -> Vibrionales -> Vibrionaceae -> Photobacterium

OVERVIEW:

Plump, straight rods, 0.8–1.3 × 1.8–2.4 μm; some coccobacillary and bipolar. Involution forms are usually seen in old cultures or under adverse conditions of cultivation. Gram negative. Motile by 1–3 unsheathed polar flagella; some species nonmotile. Facultative anaerobic. Chemoorganotrophic, having both a respiratory and a fermentative type of metabolism. Optimal growth temperature range appears to be 18–25°C, except for the psychrophilic species P. profundum. Sodium ions are required for growth. d-Glucose and d-mannose are catabolized with the production of acid and, in the case of P. damselae subsp. damselae, P. iliopiscarium, and P. phosphoreum, with gas. Oxidase reaction is variable. Most strains are lysine decarboxylase and arginine di-hydrolase positive. Ornithine decarboxylase negative. Accumulate poly-β-hydroxybutyrate (PBH) under certain conditions of cultivation; do not use the exogenous monomer β-hydroxybutyrate. Most strains grow in a minimal medium containing a seawater base, d-glucose, and NH4Cl; other strains also require l-methionine. Utilize d-glucose, d-fructose, glycerol, and d-mannose. Some species are bioluminescent.The mol% G + C of the DNA is: 39–44 (Baumann and Baumann, 1977).Type species: Photobacterium phosphoreum (

TAGS

Keystone	Core species	Type species	Pathogen	Dysbiosis associated	Flora/ commensal	Gut associated	Probiotic
Leanness	Obesity	Skin microbiome	Fecal distribution	Oral microbiome	Vaginal microbiome	Butyrate producer	Catalase producer
Histamine producer	Food fermenter	Amylolytic	Propionate producer	Nitrifying

DESCENDANTS Photobacterium aestuarii Photobacterium angustum Photobacterium aphoticum Photobacterium aplysiae Photobacterium aquae Photobacterium aquimaris Photobacterium atrarenae Photobacterium damselae Photobacterium frigidiphilum Photobacterium gaetbulicola Photobacterium galatheae Photobacterium ganghwense Photobacterium halotolerans Photobacterium iliopiscarium Photobacterium indicum Photobacterium jeanii Photobacterium kishitanii Photobacterium leiognathi Photobacterium lipolyticum Photobacterium lutimaris Photobacterium marinum Photobacterium panuliri Photobacterium phosphoreum Photobacterium piscicola Photobacterium profundum Photobacterium rosenbergii Photobacterium sanctipauli Photobacterium sp. Photobacterium swingsii environmental samples	INTERACTIONS	KEGG PATHWAYS 2-Oxocarboxylic acid metabolism ABC transporters Alanine, aspartate and glutamate metabolism Amino sugar and nucleotide sugar metabolism Aminoacyl-tRNA biosynthesis Aminobenzoate degradation Arachidonic acid metabolism Arginine and proline metabolism Arginine biosynthesis Ascorbate and aldarate metabolism Bacterial chemotaxis Bacterial secretion system Base excision repair Benzoate degradation Biosynthesis of amino acids Biosynthesis of antibiotics Biosynthesis of secondary metabolites Biosynthesis of siderophore group nonribosomal peptides Biosynthesis of unsaturated fatty acids Biotin metabolism Butanoate metabolism C5-Branched dibasic acid metabolism Caprolactam degradation Carbapenem biosynthesis Carbon metabolism Cationic antimicrobial peptide (CAMP) resistance Chloroalkane and chloroalkene degradation Chlorocyclohexane and chlorobenzene degradation Citrate cycle (TCA cycle) Cyanoamino acid metabolism Cysteine and methionine metabolism D-Alanine metabolism D-Glutamine and D-glutamate metabolism DNA replication Degradation of aromatic compounds Ether lipid metabolism Fatty acid biosynthesis Fatty acid degradation Fatty acid metabolism Flagellar assembly Folate biosynthesis Fructose and mannose metabolism Galactose metabolism Geraniol degradation Glutathione metabolism Glycerolipid metabolism Glycerophospholipid metabolism Glycine, serine and threonine metabolism Glycolysis / Gluconeogenesis Glyoxylate and dicarboxylate metabolism Histidine metabolism Homologous recombination Inositol phosphate metabolism Limonene and pinene degradation Lipoic acid metabolism Lipopolysaccharide biosynthesis Lysine biosynthesis Lysine degradation Metabolic pathways Methane metabolism Microbial metabolism in diverse environments Mismatch repair Monobactam biosynthesis Naphthalene degradation Nicotinate and nicotinamide metabolism Nitrogen metabolism Nitrotoluene degradation Nonribosomal peptide structures Novobiocin biosynthesis Nucleotide excision repair One carbon pool by folate Other glycan degradation Oxidative phosphorylation Pantothenate and CoA biosynthesis Pentose and glucuronate interconversions Pentose phosphate pathway Peptidoglycan biosynthesis Phenylalanine metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Phosphotransferase system (PTS) Porphyrin and chlorophyll metabolism Propanoate metabolism Protein export Purine metabolism Pyrimidine metabolism Pyruvate metabolism Quorum sensing00253 RNA degradation RNA polymerase Riboflavin metabolism Ribosome Selenocompound metabolism Sphingolipid metabolism Starch and sucrose metabolism Streptomycin biosynthesis Styrene degradation Sulfur metabolism Sulfur relay system Synthesis and degradation of ketone bodies Taurine and hypotaurine metabolism Terpenoid backbone biosynthesis Thiamine metabolism Tryptophan metabolism Two-component system Tyrosine metabolism Ubiquinone and other terpenoid-quinone biosynthesis Valine, leucine and isoleucine biosynthesis Valine, leucine and isoleucine degradation Vancomycin resistance Vitamin B6 metabolism alpha-Linolenic acid metabolism beta-Alanine metabolism beta-Lactam resistance CLUSTERS WITH	METABOLOMICS NUTRIENTS/ SUBSTRATES ENDPRODUCTS INHIBITED BY ENHANCED BY BIOTRANSFORMS BIOTRANFORM
ANTIBIOTIC RESISTANCE Tetracycline (tety) Chloramphenicol (cata1) Paromomycin (aph3ia) Neomycin (aph3ia) Kanamycin (aph3ia) Ribostamycin (aph3ia) Lividomycin (aph3ia) Gentamincin b (aph3ia) Tetracycline (tetm) Sulfonamide (sul2) Tetracycline (tetd) Chloramphenicol (cata14) Chloramphenicol (cata2) Tetracycline (tetb)	BIOFILM FORMERS Photobacterium angustum Photobacterium damselae Photobacterium profundum	COGEM PATHOGENICITY Photobacterium damselae (2)

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