Datapunk Opus23 | Psychrobacter

Psychrobacter

RANK: Genus

TAXONOMY: cellular organisms -> Bacteria -> Proteobacteria -> Gammaproteobacteria -> Pseudomonadales -> Moraxellaceae -> Psychrobacter

OVERVIEW:

Rods or cocci, 0.9–1.3 × 1.5–3.8 µm. Rods can vary in length from extremely short (coccobacilli) to relatively long. For some strains the rods tend to be somewhat swollen. Also observed to grow as cocci or coccobacilli. Nonpigmented. Colonies on heart infusion agar are usually cream-colored, smooth, and opaque. Gram negative; the stain frequently tends to be retained. Nonmotile, and aerobic. Most strains are psychrotrophic; they are able to grow at 5°C, have temperature optima near 20°C, and generally are unable to grow at 35–37°C. Strains able to grow well at 35–37°C usually cannot grow at 5°C. Grow well on most common complex media. Most strains can grow on a mineral-agar medium containing a single carbon and energy source and ammonium salts as the nitrogen source. Some strains form acid aerobically from d-glucose, d-mannose, d-galactose, l-arabinose, d-xylose, and l-rhamnose. They are halotolerant and grow in the presence of 6.5% or greater NaCl. Many strains are radiation resistant. Oxidase positive. Catalase positive. Many strains are competent for natural genetic transformation. Have been isolated from the open sea, the deep sea, sea ice, ornithogenic soils, skins and gills of fish, skins of poultry, various food products, irradiated foods, air contaminants, and from a variety of human sources. Not known to be clinically significant. Cultures of Psychrobacter can be maintained in the same manner as for cultures of Acinetobacter, as described above.The mol% G + C of the DNA is: 41–50.7.Type species: Psychrobacter immobilis

This genus contains microbial species that can reside in the human gastrointestinal tract. [PMC 4262072]

Microbial Abundance Data: Psychrobacter (Percent of total population with standard deviation [PMID: 22698087])
Group 1				Group 2					Group 3			Group 4
Group 1 Avg	Buccal Mucosa	Keratinized Gingiva	Hard Palate	Group 2 Avg	Throat	Throat	Tonsils	Saliva	Group 3 Avg	Supragingival Plaque	Subgingival Plaque	Stool
0.000 % (0.000)	0.000 % (0.000)	0.000 % (0.000)	0.000 % (0.000)	0.000 % (0.005)	0.001 % (0.015)	0.000 % (0.001)	0.000 % (0.000)	0.000 % (0.003)	0.000 % (0.000)	0.000 % (0.000)	0.000 % (0.000)	0.000 % (0.000)

TAGS

Keystone	Core species	Type species	Pathogen	Dysbiosis associated	Flora/ commensal	Gut associated	Probiotic
Leanness	Obesity	Skin microbiome	Fecal distribution	Oral microbiome	Vaginal microbiome	Butyrate producer	Catalase producer
Histamine producer	Food fermenter	Amylolytic	Propionate producer	Nitrifying

DESCENDANTS Psychrobacter SKNB7 Psychrobacter adeliensis Psychrobacter aestuarii Psychrobacter aff. glacinola 4.21 Psychrobacter aff. glacinola A1/C-aer/OII Psychrobacter alimentarius Psychrobacter allis Psychrobacter aquaticus Psychrobacter aquimaris Psychrobacter arcticus Psychrobacter arenosus Psychrobacter celer Psychrobacter cibarius Psychrobacter ciconiae Psychrobacter cryohalolentis Psychrobacter faecalis Psychrobacter fozii Psychrobacter frigidicola Psychrobacter fulvigenes Psychrobacter glacialis Psychrobacter glaciei Psychrobacter glacincola Psychrobacter halophilus Psychrobacter immobilis Psychrobacter jeotgali Psychrobacter luti Psychrobacter lutiphocae Psychrobacter marincola Psychrobacter maritimus Psychrobacter meningitidis Psychrobacter muriicola Psychrobacter namhaensis Psychrobacter nivimaris Psychrobacter oceani Psychrobacter okhotskensis Psychrobacter pacificensis Psychrobacter phenylpyruvicus Psychrobacter piscatorii Psychrobacter piscidermidis Psychrobacter proteolyticus Psychrobacter psychrophilus Psychrobacter pulmonis Psychrobacter salsus Psychrobacter sanguinis Psychrobacter sp. Psychrobacter sp. m090608c Psychrobacter submarinus Psychrobacter urativorans Psychrobacter vallis environmental samples unclassified Psychrobacter	INTERACTIONS	KEGG PATHWAYS 2-Oxocarboxylic acid metabolism ABC transporters Alanine, aspartate and glutamate metabolism Amino sugar and nucleotide sugar metabolism Aminoacyl-tRNA biosynthesis Arachidonic acid metabolism Arginine and proline metabolism Arginine biosynthesis Ascorbate and aldarate metabolism Bacterial chemotaxis Bacterial secretion system Base excision repair Benzoate degradation Biosynthesis of amino acids Biosynthesis of antibiotics Biosynthesis of secondary metabolites Biosynthesis of unsaturated fatty acids Biotin metabolism Butanoate metabolism C5-Branched dibasic acid metabolism Caprolactam degradation Carbapenem biosynthesis Carbon metabolism Cationic antimicrobial peptide (CAMP) resistance Chloroalkane and chloroalkene degradation Citrate cycle (TCA cycle) Cyanoamino acid metabolism Cysteine and methionine metabolism D-Alanine metabolism D-Glutamine and D-glutamate metabolism DNA replication Degradation of aromatic compounds Dioxin degradation Ether lipid metabolism Ethylbenzene degradation Fatty acid biosynthesis Fatty acid degradation Fatty acid metabolism Folate biosynthesis Fructose and mannose metabolism Galactose metabolism Geraniol degradation Glutathione metabolism Glycerolipid metabolism Glycerophospholipid metabolism Glycine, serine and threonine metabolism Glycolysis / Gluconeogenesis Glyoxylate and dicarboxylate metabolism Histidine metabolism Homologous recombination Inositol phosphate metabolism Limonene and pinene degradation Linoleic acid metabolism Lipoic acid metabolism Lipopolysaccharide biosynthesis Lysine biosynthesis Lysine degradation Metabolic pathways Methane metabolism Microbial metabolism in diverse environments Mismatch repair Monobactam biosynthesis Naphthalene degradation Nicotinate and nicotinamide metabolism Nitrogen metabolism Nitrotoluene degradation Novobiocin biosynthesis Nucleotide excision repair One carbon pool by folate Oxidative phosphorylation Pantothenate and CoA biosynthesis Pentose and glucuronate interconversions Pentose phosphate pathway Peptidoglycan biosynthesis Phenylalanine metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Phosphonate and phosphinate metabolism Porphyrin and chlorophyll metabolism Propanoate metabolism Protein export Purine metabolism Pyrimidine metabolism Pyruvate metabolism Quorum sensing00253 RNA degradation RNA polymerase Riboflavin metabolism Ribosome Secondary bile acid biosynthesis Selenocompound metabolism Starch and sucrose metabolism Streptomycin biosynthesis Styrene degradation Sulfur metabolism Sulfur relay system Synthesis and degradation of ketone bodies Taurine and hypotaurine metabolism Terpenoid backbone biosynthesis Thiamine metabolism Tryptophan metabolism Two-component system Tyrosine metabolism Ubiquinone and other terpenoid-quinone biosynthesis Valine, leucine and isoleucine biosynthesis Valine, leucine and isoleucine degradation Vancomycin resistance Vitamin B6 metabolism Xylene degradation alpha-Linolenic acid metabolism beta-Alanine metabolism beta-Lactam resistance CLUSTERS WITH Group 61 Psychrobacter Frankia alni Pseudoalteromonas haloplanktis Acidothermus cellulolyticus Idiomarina loihiensis Psychrobacter cryohalolentis Pseudoalteromonas atlantica	METABOLOMICS NUTRIENTS/ SUBSTRATES ENDPRODUCTS INHIBITED BY ENHANCED BY BIOTRANSFORMS BIOTRANFORM
ANTIBIOTIC RESISTANCE	BIOFILM FORMERS Psychrobacter arcticus Psychrobacter cryohalolentis	COGEM PATHOGENICITY

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