Datapunk Opus23 | Ochrobactrum

Ochrobactrum

RANK: Genus

TAXONOMY: cellular organisms -> Bacteria -> Proteobacteria -> Alphaproteobacteria -> Rhizobiales -> Brucellaceae -> Ochrobactrum

OVERVIEW:

Rods with parallel sides and rounded ends, typically 1.0 × 1.5–2.0 µm; shorter oval forms, 1.0–1.5 µm in length, may occur. Cells usually occur singly. Gram negative. Motile by means of peritrichous flagella. Obligately aerobic, having a strictly respiratory type of metabolism. Optimal growth temperature in the range 20–37°C. Colonies on nutrient agar are smooth, low convex, and translucent (opaque and mucoid, quickly becoming confluent in O. tritici). Chemoorganotrophic, using a variety of amino acids, organic acids, and carbohydrates as carbon sources. Acid is produced from glucose, arabinose, ethanol, fructose, rhamnose, and xylose. Oxidase positive. Catalase positive. Indole is not formed. Nitrates usually reduced. Growth occurs on MacConkey agar. Urease usually positive. Ornithine decarboxylase (ODC) negative. Occur in human clinical specimens, also in soil samples and wheat roots. Parameters of DNA–rRNA hybrids indicate that Ochrobactrum belongs to the Brucella branch within rRNA superfamily IV. 16S rRNA gene sequence analysis places Ochrobactrum in the group of bacteria known as the α-2 subclass of the Proteobacteria. At the suprageneric level, Ochrobactrum is related to Brucella, Phyllobacterium, Rhizobium, and Agrobacterium.The mol% G + C of the DNA is: 56–59.Type species: Ochrobactrum anthropi

This genus contains microbial species that can reside in the human gastrointestinal tract. [PMC 4262072]

Microbial Abundance Data: Ochrobactrum (Percent of total population with standard deviation [PMID: 22698087])
Group 1				Group 2					Group 3			Group 4
Group 1 Avg	Buccal Mucosa	Keratinized Gingiva	Hard Palate	Group 2 Avg	Throat	Throat	Tonsils	Saliva	Group 3 Avg	Supragingival Plaque	Subgingival Plaque	Stool
0.000 % (0.000)	0.000 % (0.000)	0.000 % (0.000)	0.000 % (0.000)	0.000 % (0.001)	0.000 % (0.004)	0.000 % (0.000)	0.000 % (0.000)	0.000 % (0.000)	0.000 % (0.000)	0.000 % (0.000)	0.000 % (0.000)	0.000 % (0.000)

TAGS

Keystone	Core species	Type species	Pathogen	Dysbiosis associated	Flora/ commensal	Gut associated	Probiotic
Leanness	Obesity	Skin microbiome	Fecal distribution	Oral microbiome	Vaginal microbiome	Butyrate producer	Catalase producer
Histamine producer	Food fermenter	Amylolytic	Propionate producer	Nitrifying

DESCENDANTS Ochrobactrum anthropi Ochrobactrum ciceri Ochrobactrum cytisi Ochrobactrum daejeonense Ochrobactrum gallinifaecis Ochrobactrum grignonense Ochrobactrum guangzhouense Ochrobactrum haematophilum Ochrobactrum intermedium Ochrobactrum lupini Ochrobactrum oryzae Ochrobactrum pecoris Ochrobactrum pituitosum Ochrobactrum pseudintermedium Ochrobactrum pseudogrignonense Ochrobactrum rhizosphaerae Ochrobactrum shiyianus Ochrobactrum sp. Ochrobactrum sp. PED4-7 Ochrobactrum sp. SCTS14 Ochrobactrum sp.KAs3-R1 Ochrobactrum thiophenivorans Ochrobactrum tritici environmental samples unclassified Ochrobactrum	INTERACTIONS	KEGG PATHWAYS 2-Oxocarboxylic acid metabolism ABC transporters Acarbose and validamycin biosynthesis Alanine, aspartate and glutamate metabolism Amino sugar and nucleotide sugar metabolism Aminoacyl-tRNA biosynthesis Aminobenzoate degradation Arginine and proline metabolism Arginine biosynthesis Ascorbate and aldarate metabolism Bacterial chemotaxis Bacterial secretion system Base excision repair Benzoate degradation Biosynthesis of amino acids Biosynthesis of antibiotics Biosynthesis of secondary metabolites Biosynthesis of unsaturated fatty acids Biotin metabolism Butanoate metabolism C5-Branched dibasic acid metabolism Caprolactam degradation Carbapenem biosynthesis Carbon metabolism Carotenoid biosynthesis Cationic antimicrobial peptide (CAMP) resistance Chloroalkane and chloroalkene degradation Chlorocyclohexane and chlorobenzene degradation Citrate cycle (TCA cycle) Cyanoamino acid metabolism Cysteine and methionine metabolism D-Alanine metabolism D-Arginine and D-ornithine metabolism D-Glutamine and D-glutamate metabolism DNA replication Degradation of aromatic compounds Dioxin degradation Fatty acid biosynthesis Fatty acid degradation Fatty acid metabolism Flagellar assembly Fluorobenzoate degradation Folate biosynthesis Fructose and mannose metabolism Galactose metabolism Geraniol degradation Glutathione metabolism Glycerolipid metabolism Glycerophospholipid metabolism Glycine, serine and threonine metabolism Glycolysis / Gluconeogenesis Glyoxylate and dicarboxylate metabolism Histidine metabolism Homologous recombination Inositol phosphate metabolism Limonene and pinene degradation Lipoic acid metabolism Lipopolysaccharide biosynthesis Lysine biosynthesis Lysine degradation Metabolic pathways Methane metabolism Microbial metabolism in diverse environments Mismatch repair Monobactam biosynthesis Naphthalene degradation Nicotinate and nicotinamide metabolism Nitrogen metabolism Nitrotoluene degradation Non-homologous end-joining Nonribosomal peptide structures Novobiocin biosynthesis Nucleotide excision repair One carbon pool by folate Oxidative phosphorylation Pantothenate and CoA biosynthesis Pentose and glucuronate interconversions Pentose phosphate pathway Peptidoglycan biosynthesis Phenazine biosynthesis Phenylalanine metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Phosphonate and phosphinate metabolism Phosphotransferase system (PTS) Polycyclic aromatic hydrocarbon degradation Polyketide sugar unit biosynthesis Porphyrin and chlorophyll metabolism Propanoate metabolism Protein export Purine metabolism Pyrimidine metabolism Pyruvate metabolism Quorum sensing00253 RNA degradation RNA polymerase Riboflavin metabolism Ribosome Secondary bile acid biosynthesis Selenocompound metabolism Starch and sucrose metabolism Streptomycin biosynthesis Styrene degradation Sulfur metabolism Sulfur relay system Synthesis and degradation of ketone bodies Taurine and hypotaurine metabolism Terpenoid backbone biosynthesis Thiamine metabolism Toluene degradation Tryptophan metabolism Two-component system Tyrosine metabolism Ubiquinone and other terpenoid-quinone biosynthesis Valine, leucine and isoleucine biosynthesis Valine, leucine and isoleucine degradation Vancomycin resistance Vitamin B6 metabolism Xylene degradation beta-Alanine metabolism beta-Lactam resistance CLUSTERS WITH	METABOLOMICS NUTRIENTS/ SUBSTRATES ENDPRODUCTS INHIBITED BY ENHANCED BY BIOTRANSFORMS BIOTRANFORM
ANTIBIOTIC RESISTANCE Tetracycline (tetg) Tetracycline (tetl) Cephalosporin (bl1_och)	BIOFILM FORMERS	COGEM PATHOGENICITY Ochrobactrum anthropi (2) Ochrobactrum intermedium (2)

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