Datapunk Opus23 | Eubacterium

Eubacterium

RANK: Genus

TAXONOMY: Bacteria -> Terrabacteria group -> Firmicutes -> Clostridia -> Clostridiales -> Eubacteriaceae -> Eubacterium

OVERVIEW:

'Eubacterium' could be either a Gram- positive or Gram-negative bacteria genus in the family Eubacteriaceae. These bacteria are characterised by a rigid cell wall. They may either be motile or non-motile. If motile, they have a flagellum. A typical flagellum consists of a basal body, filament, and hook. The long filament is the organ which helps eubacteria move. Gram-positive bacteria have a thick proteoglycan layer and uptake violet gram- stain (whereas gram-negative bacteria have a thinner proteoglycan layer which is surrounded by a layer of immune-response-inducing lipopolysaccharide, and do not uptake gram-stain). Species from this genus have been isolated from women with bacterial vaginosis.

This genus contains microbial species that can reside in the human gastrointestinal tract. [PMC 4262072]

Microbial Abundance Data: Eubacterium (Percent of total population with standard deviation [PMID: 22698087])
Group 1				Group 2					Group 3			Group 4
Group 1 Avg	Buccal Mucosa	Keratinized Gingiva	Hard Palate	Group 2 Avg	Throat	Throat	Tonsils	Saliva	Group 3 Avg	Supragingival Plaque	Subgingival Plaque	Stool
0.072 % (0.099)	0.034 % (0.060)	0.004 % (0.016)	0.177 % (0.222)	0.174 % (0.279)	0.215 % (0.328)	0.233 % (0.441)	0.132 % (0.182)	0.117 % (0.167)	0.099 % (0.174)	0.036 % (0.095)	0.162 % (0.254)	0.148 % (0.481)

TAGS

Keystone	Core species	Type species	Pathogen	Dysbiosis associated	Flora/ commensal	Gut associated	Probiotic
Leanness	Obesity	Skin microbiome	Fecal distribution	Oral microbiome	Vaginal microbiome	Butyrate producer	Catalase producer
Histamine producer	Food fermenter	Amylolytic	Propionate producer	Nitrifying

DESCENDANTS Eubacterium acidaminophilum Eubacterium aggregans Eubacterium albensis Eubacterium barkeri Eubacterium brachy Eubacterium budayi Eubacterium callanderi Eubacterium cellulosolvens Eubacterium combesii Eubacterium coprostanoligenes Eubacterium desmolans Eubacterium eligens Eubacterium hallii Eubacterium limosum Eubacterium multiforme Eubacterium nitritogenes Eubacterium oxidoreducens Eubacterium pectinii Eubacterium plexicaudatum Eubacterium pyruvativorans Eubacterium ramulus Eubacterium rangiferina Eubacterium ruminantium Eubacterium saphenum Eubacterium sp. Eubacterium sp. ARC-2 Eubacterium sp. SA11 Eubacterium thermomarinus Eubacterium uniforme Eubacterium ventriosum Eubacterium xylanophilum environmental samples	INTERACTIONS ENHANCES Bacteroidales Bacteroides Odoribacter Peptococcaceae Bacteroidales Bacteroides Odoribacter Peptococcaceae INHIBITS Bifidobacterium Coriobacteriales Adlercreutzia Collinsella Porphyromonas Prevotella Clostridium Clostridiales incertae sedis Clostridiales Family XIII. Incertae Sedis Blautia Coprococcus Dorea Lachnospiraceae Ruminococcaceae Ruminococcus Dialister Campylobacteraceae Erysipelotrichaceae Bifidobacterium Coriobacteriales Adlercreutzia Collinsella Porphyromonas Prevotella Clostridium Clostridiales incertae sedis Clostridiales Family XIII. Incertae Sedis Blautia Coprococcus Dorea Lachnospiraceae Ruminococcaceae Ruminococcus Dialister Campylobacteraceae Erysipelotrichaceae	KEGG PATHWAYS 2-Oxocarboxylic acid metabolism ABC transporters Acarbose and validamycin biosynthesis Alanine, aspartate and glutamate metabolism Amino sugar and nucleotide sugar metabolism Aminoacyl-tRNA biosynthesis Arachidonic acid metabolism Arginine and proline metabolism Arginine biosynthesis Ascorbate and aldarate metabolism Bacterial secretion system Base excision repair Benzoate degradation Biosynthesis of amino acids Biosynthesis of antibiotics Biosynthesis of secondary metabolites Biosynthesis of unsaturated fatty acids Biotin metabolism Butanoate metabolism C5-Branched dibasic acid metabolism Carbapenem biosynthesis Carbon metabolism Carotenoid biosynthesis Cationic antimicrobial peptide (CAMP) resistance Chloroalkane and chloroalkene degradation Citrate cycle (TCA cycle) Cyanoamino acid metabolism Cysteine and methionine metabolism D-Alanine metabolism D-Glutamine and D-glutamate metabolism DNA replication Degradation of aromatic compounds Fatty acid biosynthesis Fatty acid degradation Fatty acid metabolism Folate biosynthesis Fructose and mannose metabolism Galactose metabolism Glutathione metabolism Glycerolipid metabolism Glycerophospholipid metabolism Glycine, serine and threonine metabolism Glycolysis / Gluconeogenesis Glyoxylate and dicarboxylate metabolism Histidine metabolism Homologous recombination Lysine biosynthesis Metabolic pathways Methane metabolism Microbial metabolism in diverse environments Mismatch repair Monobactam biosynthesis Nicotinate and nicotinamide metabolism Nitrogen metabolism Nitrotoluene degradation Novobiocin biosynthesis Nucleotide excision repair One carbon pool by folate Oxidative phosphorylation Pantothenate and CoA biosynthesis Pentose and glucuronate interconversions Pentose phosphate pathway Peptidoglycan biosynthesis Phenylalanine metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Phosphonate and phosphinate metabolism Phosphotransferase system (PTS) Polyketide sugar unit biosynthesis Porphyrin and chlorophyll metabolism Propanoate metabolism Protein export Purine metabolism Pyrimidine metabolism Pyruvate metabolism RNA degradation RNA polymerase Riboflavin metabolism Ribosome Secondary bile acid biosynthesis Selenocompound metabolism Starch and sucrose metabolism Streptomycin biosynthesis Sulfur metabolism Sulfur relay system Taurine and hypotaurine metabolism Terpenoid backbone biosynthesis Thiamine metabolism Two-component system Tyrosine metabolism Ubiquinone and other terpenoid-quinone biosynthesis Valine, leucine and isoleucine biosynthesis Valine, leucine and isoleucine degradation Vancomycin resistance Vitamin B6 metabolism beta-Alanine metabolism beta-Lactam resistance CLUSTERS WITH	METABOLOMICS NUTRIENTS/ SUBSTRATES Peptone [parent] ENDPRODUCTS Formic acid [parent] Butyrate [parent] Acetic acid [parent] INHIBITED BY Flaxseed High meat diet ENHANCED BY Dietary fiber Resistant starch (type IV) High fiber diet BIOTRANSFORMS Pinoresinol Metaraminol Lariciresinol Isolarciresinol Syringaresinol Secoisolariciresinol BIOTRANFORM
ANTIBIOTIC RESISTANCE	BIOFILM FORMERS	COGEM PATHOGENICITY Eubacterium sp 14 2 (2) Eubacterium ventriosum (2)

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