Datapunk Opus23 | Achromobacter

Achromobacter

RANK: Genus

TAXONOMY: cellular organisms -> Bacteria -> Proteobacteria -> Betaproteobacteria -> Burkholderiales -> Alcaligenaceae -> Achromobacter

OVERVIEW:

Straight rods, 0.8–1.2 × 2.5–3.0 µm with rounded ends. Gram negative. Nonsporeforming. Motile with 1–20 sheathed flagella arranged peritrichously. Obligately aerobic and nonfermentative. Some strains are capable of anaerobic respiration with nitrate as the electron acceptor. They perform nitrate respiration combined with nitrite and nitrous oxide respiration. Some strains are facultative lithoautotrophic hydrogen-oxidizers. Oxidase positive. Catalase positive. Urease, DNase, phenylalanine deaminase, lysine and ornithine decarboxylase, arginine dihydrolase, and gelatinase negative. Nonhalophilic, nonhemolytic, nonpigmented. Chemoorganotrophic, using a variety of organic acids and amino acids as carbon sources. Carbohydrates usually not utilized. Achromobacter xylosoxidans subsp. xylosoxidans and Achromobacter ruhlandii utilize d-glucose as sole carbon source and produce acid from d-glucose, d-arabinose, and d-xylose. Those strains analyzed contain the characteristic fatty acids C17:0 cyclo, C16:0, C14:0 3OH, C16:1, C12:0 2OH, and ubiquinone Q-8. The polyamine patterns display putrescine as the major compound and contain the unusual diamine 2-hydroxyputrescine.The mol% G + C of the DNA is: 65–68. Type species: Achromobacter xylosoxidans

This genus contains microbial species that can reside in the human gastrointestinal tract. [PMC 4262072]

Microbial Abundance Data: Achromobacter (Percent of total population with standard deviation [PMID: 22698087])
Group 1				Group 2					Group 3			Group 4
Group 1 Avg	Buccal Mucosa	Keratinized Gingiva	Hard Palate	Group 2 Avg	Throat	Throat	Tonsils	Saliva	Group 3 Avg	Supragingival Plaque	Subgingival Plaque	Stool
0.000 % (0.000)	0.000 % (0.001)	0.000 % (0.000)	0.000 % (0.000)	0.000 % (0.000)	0.000 % (0.001)	0.000 % (0.000)	0.000 % (0.000)	0.000 % (0.000)	0.000 % (0.000)	0.000 % (0.000)	0.000 % (0.000)	0.001 % (0.018)

TAGS

Keystone	Core species	Type species	Pathogen	Dysbiosis associated	Flora/ commensal	Gut associated	Probiotic
Leanness	Obesity	Skin microbiome	Fecal distribution	Oral microbiome	Vaginal microbiome	Butyrate producer	Catalase producer
Histamine producer	Food fermenter	Amylolytic	Propionate producer	Nitrifying

DESCENDANTS Achromobacter aegrifaciens Achromobacter agile Achromobacter animicus Achromobacter anxifer Achromobacter arsenitoxydans Achromobacter cholinophagum Achromobacter clevelandea Achromobacter cycloclastes Achromobacter denitrificans Achromobacter dolens Achromobacter insolitus Achromobacter insuavis Achromobacter lyticus Achromobacter marplatensis Achromobacter mucicolens Achromobacter obae Achromobacter piechaudii Achromobacter pulmonis Achromobacter ruhlandii Achromobacter sediminum Achromobacter sp. Achromobacter sp.40AAV Achromobacter sp.RS4 Achromobacter spanius Achromobacter xylosoxidans environmental samples	INTERACTIONS ENHANCES Bacteroidales Bacteroides Odoribacter Peptococcaceae INHIBITS Bifidobacterium Coriobacteriales Adlercreutzia Collinsella Porphyromonas Prevotella Clostridium Clostridiales incertae sedis Clostridiales Family XIII. Incertae Sedis Blautia Coprococcus Dorea Lachnospiraceae Ruminococcaceae Ruminococcus Dialister Campylobacteraceae Erysipelotrichaceae	KEGG PATHWAYS 2-Oxocarboxylic acid metabolism ABC transporters Acarbose and validamycin biosynthesis Alanine, aspartate and glutamate metabolism Amino sugar and nucleotide sugar metabolism Aminoacyl-tRNA biosynthesis Aminobenzoate degradation Arachidonic acid metabolism Arginine and proline metabolism Arginine biosynthesis Ascorbate and aldarate metabolism Atrazine degradation Bacterial chemotaxis Bacterial secretion system Base excision repair Benzoate degradation Biosynthesis of amino acids Biosynthesis of antibiotics Biosynthesis of secondary metabolites Biosynthesis of unsaturated fatty acids Biotin metabolism Butanoate metabolism C5-Branched dibasic acid metabolism Caprolactam degradation Carbapenem biosynthesis Carbon metabolism Carotenoid biosynthesis Cationic antimicrobial peptide (CAMP) resistance Chloroalkane and chloroalkene degradation Chlorocyclohexane and chlorobenzene degradation Citrate cycle (TCA cycle) Cyanoamino acid metabolism Cysteine and methionine metabolism D-Alanine metabolism D-Arginine and D-ornithine metabolism D-Glutamine and D-glutamate metabolism DNA replication Degradation of aromatic compounds Dioxin degradation Ether lipid metabolism Ethylbenzene degradation Fatty acid biosynthesis Fatty acid degradation Fatty acid metabolism Flagellar assembly Fluorobenzoate degradation Folate biosynthesis Fructose and mannose metabolism Galactose metabolism Geraniol degradation Glutathione metabolism Glycerolipid metabolism Glycerophospholipid metabolism Glycine, serine and threonine metabolism Glycolysis / Gluconeogenesis Glyoxylate and dicarboxylate metabolism Histidine metabolism Homologous recombination Inositol phosphate metabolism Limonene and pinene degradation Lipoic acid metabolism Lipopolysaccharide biosynthesis Lysine biosynthesis Lysine degradation Metabolic pathways Methane metabolism Microbial metabolism in diverse environments Mismatch repair Monobactam biosynthesis Naphthalene degradation Nicotinate and nicotinamide metabolism Nitrogen metabolism Nitrotoluene degradation Non-homologous end-joining Nonribosomal peptide structures Novobiocin biosynthesis Nucleotide excision repair One carbon pool by folate Oxidative phosphorylation Pantothenate and CoA biosynthesis Pentose and glucuronate interconversions Pentose phosphate pathway Peptidoglycan biosynthesis Phenazine biosynthesis Phenylalanine metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Phosphonate and phosphinate metabolism Phosphotransferase system (PTS) Polycyclic aromatic hydrocarbon degradation Polyketide sugar unit biosynthesis Porphyrin and chlorophyll metabolism Propanoate metabolism Protein export Purine metabolism Pyrimidine metabolism Pyruvate metabolism Quorum sensing00253 RNA degradation RNA polymerase Riboflavin metabolism Ribosome Secondary bile acid biosynthesis Selenocompound metabolism Starch and sucrose metabolism Streptomycin biosynthesis Styrene degradation Sulfur metabolism Sulfur relay system Synthesis and degradation of ketone bodies Taurine and hypotaurine metabolism Terpenoid backbone biosynthesis Thiamine metabolism Toluene degradation Tryptophan metabolism Two-component system Tyrosine metabolism Ubiquinone and other terpenoid-quinone biosynthesis Valine, leucine and isoleucine biosynthesis Valine, leucine and isoleucine degradation Vancomycin resistance Vitamin B6 metabolism Xylene degradation alpha-Linolenic acid metabolism beta-Alanine metabolism beta-Lactam resistance CLUSTERS WITH	METABOLOMICS NUTRIENTS/ SUBSTRATES ENDPRODUCTS INHIBITED BY ENHANCED BY BIOTRANSFORMS BIOTRANFORM
ANTIBIOTIC RESISTANCE Erythromycin (erea) Spectinomycin (ant3ia) Streptomycin (ant3ia) Chloramphenicol (cata1) Cephamycin (bl3_vim) Cephalosporin (bl3_vim) Penicillin (bl3_vim) Carbapenem (bl3_vim) Tobramycin (aac6ib) Netilmicin (aac6ib) Isepamicin (aac6ib) Amikacin (aac6ib) Sisomicin (aac6ib) Dibekacin (aac6ib) Trimethoprim (dfra14) Tobramycin (ant2ia) Sisomicin (ant2ia) Kanamycin (ant2ia) Gentamicin (ant2ia) Dibekacin (ant2ia) Sulfonamide (sul1) Cephalosporin (bl2_veb) Penicillin (bl2_veb) Cephalosproin (bl3_imp) Cephamycin (bl3_imp) Penicillin (bl3_imp) Carbapenem (bl3_imp) Cloxacillin (bl2d_oxa2) Penicillin (bl2d_oxa2)	BIOFILM FORMERS	COGEM PATHOGENICITY Achromobacter piechaudii (2) Achromobacter xylosoxidans (2)

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