Datapunk Opus23 | Pantoea

Pantoea

RANK: Genus

TAXONOMY: cellular organisms -> Bacteria -> Proteobacteria -> Gammaproteobacteria -> Enterobacteriales -> Enterobacteriaceae -> Pantoea

OVERVIEW:

Straight rods, 0.5–1.3 × 1.0–3.0 µm. Nonencapsulated. Nonsporeforming. Some strains form symplasmata. Most strains are motile and are peritrichously flagellated. Gram negative. Colonies on nutrient agar are smooth, translucent, and more or less convex with entire margins or heterogenous in consistency and adhering to the agar. Colonies are yellow, pale beige to pale reddish yellow, or nonpigmented. Facultatively anaerobic. Oxidase negative. Glucose dehydrogenase and gluconate dehydrogenase are produced and are active without an added cofactor. Acid is produced from the fermentation of d-fructose, d-galactose, trehalose, and d-ribose. Most strains are Voges–Proskauer positive. Lysine and ornithine are not decarboxylated. Urease negative. Pectate is not degraded. H2S is not produced from thiosulfate. Optimum temperature 30°C. N-acetyl-d-glucosamine, l-aspartate, d-fructose, d-galactose, d-gluconate, d-glucosamine, d-glucose, l-glutamate, glycerol, d-mannose, d-ribose, and d-trehalose are utilized as sole sources of carbon and energy. 5-Aminovalerate, benzoate, caprate, caprylate, m-coumarate, ethanolamine, gentisate, glutarate, histamine, 3-hydroxybenzoate, 4-hydroxybenzoate, 3-hydroxybutyrate, itaconate, maltitol, d-melezitose, 1-O-methyl-α-d-glucoside, palatinose, 3-phenylpropionate, propionate, l-sorbose, tricarballylate, tryptamine, d-turanose, and l-tyrosine are not utilized as sole sources of carbon and energy. Pantoea spp. are isolated from plants, seeds, fruits, soils, water, and from humans (urine, blood, wounds, internal organs), and animals. Some strains are (or have been thought to be) phytopathogenic.

The mol% G + C of the DNA is: 49.7–60.6.

Type species: Pantoea agglomerans

Microbial Abundance Data: Pantoea (Percent of total population with standard deviation [PMID: 22698087])
Group 1				Group 2					Group 3			Group 4
Group 1 Avg	Buccal Mucosa	Keratinized Gingiva	Hard Palate	Group 2 Avg	Throat	Throat	Tonsils	Saliva	Group 3 Avg	Supragingival Plaque	Subgingival Plaque	Stool
0.000 % (0.001)	0.000 % (0.000)	0.000 % (0.001)	0.000 % (0.002)	0.002 % (0.020)	0.006 % (0.078)	0.000 % (0.000)	0.000 % (0.000)	0.000 % (0.000)	0.000 % (0.000)	0.000 % (0.000)	0.000 % (0.000)	0.000 % (0.003)

TAGS

Keystone	Core species	Type species	Pathogen	Dysbiosis associated	Flora/ commensal	Gut associated	Probiotic
Leanness	Obesity	Skin microbiome	Fecal distribution	Oral microbiome	Vaginal microbiome	Butyrate producer	Catalase producer
Histamine producer	Food fermenter	Amylolytic	Propionate producer	Nitrifying

DESCENDANTS Candidatus Pantoea carbekii Pantoea agglomerans group Pantoea allii Pantoea ananatis Pantoea anthophila Pantoea brenneri Pantoea calida Pantoea cedenensis Pantoea coffeiphila Pantoea conspicua Pantoea cypripedii Pantoea deleyi Pantoea dispersa Pantoea endophytica Pantoea eucalypti Pantoea eucrina Pantoea gaviniae Pantoea pleuroti Pantoea rodasii Pantoea rwandensis Pantoea secondary symbiont of Diaphorina citri Pantoea septica Pantoea sp. Pantoea sp. CWB304 Pantoea stewartii Pantoea symbiont of Graphosoma italicum Pantoea theicola Pantoea vagans Pantoea wallisii environmental samples	INTERACTIONS ENHANCES Bacteroidales Bacteroides Odoribacter Peptococcaceae INHIBITS Bifidobacterium Coriobacteriales Adlercreutzia Collinsella Porphyromonas Prevotella Clostridium Clostridiales incertae sedis Clostridiales Family XIII. Incertae Sedis Blautia Coprococcus Dorea Lachnospiraceae Ruminococcaceae Ruminococcus Dialister Campylobacteraceae Erysipelotrichaceae	KEGG PATHWAYS 2-Oxocarboxylic acid metabolism ABC transporters Alanine, aspartate and glutamate metabolism Amino sugar and nucleotide sugar metabolism Aminoacyl-tRNA biosynthesis Aminobenzoate degradation Arachidonic acid metabolism Arginine and proline metabolism Arginine biosynthesis Ascorbate and aldarate metabolism Atrazine degradation Bacterial chemotaxis Bacterial secretion system Base excision repair Benzoate degradation Biosynthesis of amino acids Biosynthesis of antibiotics Biosynthesis of secondary metabolites Biosynthesis of unsaturated fatty acids Biotin metabolism Butanoate metabolism C5-Branched dibasic acid metabolism Caprolactam degradation Carbapenem biosynthesis Carbon metabolism Carotenoid biosynthesis Cationic antimicrobial peptide (CAMP) resistance Chloroalkane and chloroalkene degradation Chlorocyclohexane and chlorobenzene degradation Citrate cycle (TCA cycle) Cyanoamino acid metabolism Cysteine and methionine metabolism D-Alanine metabolism D-Glutamine and D-glutamate metabolism DNA replication Degradation of aromatic compounds Ether lipid metabolism Fatty acid biosynthesis Fatty acid degradation Fatty acid metabolism Flagellar assembly Fluorobenzoate degradation Folate biosynthesis Fructose and mannose metabolism Galactose metabolism Geraniol degradation Glutathione metabolism Glycerolipid metabolism Glycerophospholipid metabolism Glycine, serine and threonine metabolism Glycolysis / Gluconeogenesis Glyoxylate and dicarboxylate metabolism Histidine metabolism Homologous recombination Inositol phosphate metabolism Insulin resistance Limonene and pinene degradation Lipoic acid metabolism Lipopolysaccharide biosynthesis Lysine biosynthesis Lysine degradation Metabolic pathways Methane metabolism Microbial metabolism in diverse environments Mismatch repair Monobactam biosynthesis Naphthalene degradation Nicotinate and nicotinamide metabolism Nitrogen metabolism Nitrotoluene degradation Novobiocin biosynthesis Nucleotide excision repair One carbon pool by folate Other glycan degradation Oxidative phosphorylation Pantothenate and CoA biosynthesis Pentose and glucuronate interconversions Pentose phosphate pathway Peptidoglycan biosynthesis Phenylalanine metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Phosphonate and phosphinate metabolism Phosphotransferase system (PTS) Polyketide sugar unit biosynthesis Porphyrin and chlorophyll metabolism Propanoate metabolism Protein export Purine metabolism Pyrimidine metabolism Pyruvate metabolism RNA degradation RNA polymerase Riboflavin metabolism Ribosome Selenocompound metabolism Sphingolipid metabolism Starch and sucrose metabolism Streptomycin biosynthesis Sulfur metabolism Sulfur relay system Taurine and hypotaurine metabolism Terpenoid backbone biosynthesis Thiamine metabolism Toluene degradation Tryptophan metabolism Two-component system Tyrosine metabolism Ubiquinone and other terpenoid-quinone biosynthesis Valine, leucine and isoleucine biosynthesis Valine, leucine and isoleucine degradation Vancomycin resistance Vitamin B6 metabolism alpha-Linolenic acid metabolism beta-Alanine metabolism beta-Lactam resistance CLUSTERS WITH	METABOLOMICS NUTRIENTS/ SUBSTRATES Iron supplements [parent] Acetoin [parent] D-Ribose D-Fructose D-Trehalose D-Galactose D-Mannose L-Glutamic acid ENDPRODUCTS 2,3-Butanediol [parent] INHIBITED BY Pomegranate ellagitannins [parent] ENHANCED BY Aspartame [parent] BIOTRANSFORMS BIOTRANFORM
ANTIBIOTIC RESISTANCE Spectinomycin (ant3ia) Streptomycin (ant3ia) Chloramphenicol (catb3) Monobactam (bl2be_ctxm) Cephalosporin ii (bl2be_ctxm) Cephalosporin iii (bl2be_ctxm) Penicillin (bl2be_ctxm) Cephalosporin i (bl2be_ctxm) Ceftazidime (bl2be_ctxm) Cloxacillin (bl2d_oxa10) Penicillin (bl2d_oxa10) Fluoroquinolone (qnrb)	BIOFILM FORMERS Pantoea sp YR343 Pantoea stewartii	COGEM PATHOGENICITY Pantoea stewartii (2)

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