Datapunk Opus23 | Salmonella

Salmonella

RANK: Genus

TAXONOMY: cellular organisms -> Bacteria -> Proteobacteria -> Gammaproteobacteria -> Enterobacteriales -> Enterobacteriaceae -> Salmonella

OVERVIEW:

Salmonella /ˌsælməˈnɛlə/ is a genus of rod-shaped (bacillus) gram-negative bacteria of the Enterobacteriaceae family. The two species of Salmonella are Salmonella enterica and Salmonella bongori. Salmonella enterica is the type species and is further divided into six subspecies[1]that include over 2500 serovars. S. enterica subspecies are found worldwide in all warm-blooded animals, and in the environment. S. bongori is restricted to cold-blooded animals particularly reptiles.Strains of Salmonella cause illnesses such as typhoid fever, paratyphoid fever, and food poisoning (salmonellosis). Most species of Salmonella are lysine decarboxylase (LDC) positive.

This genus contains microbial species that can reside in the human gastrointestinal tract. [PMC 4262072]

TAGS

Keystone	Core species	Type species	Pathogen	Dysbiosis associated	Flora/ commensal	Gut associated	Probiotic
Leanness	Obesity	Skin microbiome	Fecal distribution	Oral microbiome	Vaginal microbiome	Butyrate producer	Catalase producer
Histamine producer	Food fermenter	Amylolytic	Propionate producer	Nitrifying

DESCENDANTS Salmonella bongori Salmonella enterica Salmonella sp. Salmonella subterranea Salmonella typhi environmental samples	INTERACTIONS ENHANCES Bacteroidales Bacteroides Odoribacter Peptococcaceae INHIBITS Bifidobacterium Coriobacteriales Adlercreutzia Collinsella Porphyromonas Prevotella Clostridium Clostridiales incertae sedis Clostridiales Family XIII. Incertae Sedis Blautia Coprococcus Dorea Lachnospiraceae Ruminococcaceae Ruminococcus Dialister Campylobacteraceae Erysipelotrichaceae	KEGG PATHWAYS 2-Oxocarboxylic acid metabolism ABC transporters Alanine, aspartate and glutamate metabolism Amino sugar and nucleotide sugar metabolism Aminoacyl-tRNA biosynthesis Aminobenzoate degradation Arachidonic acid metabolism Arginine and proline metabolism Arginine biosynthesis Ascorbate and aldarate metabolism Bacterial chemotaxis Bacterial invasion of epithelial cells Bacterial secretion system Base excision repair Benzoate degradation Biosynthesis of amino acids Biosynthesis of antibiotics Biosynthesis of secondary metabolites Biosynthesis of siderophore group nonribosomal peptides Biosynthesis of unsaturated fatty acids Biotin metabolism Butanoate metabolism C5-Branched dibasic acid metabolism Caprolactam degradation Carbapenem biosynthesis Carbon metabolism Cationic antimicrobial peptide (CAMP) resistance Chloroalkane and chloroalkene degradation Chlorocyclohexane and chlorobenzene degradation Citrate cycle (TCA cycle) Cyanoamino acid metabolism Cysteine and methionine metabolism D-Alanine metabolism D-Glutamine and D-glutamate metabolism DNA replication Degradation of aromatic compounds Ether lipid metabolism Fatty acid biosynthesis Fatty acid degradation Fatty acid metabolism Flagellar assembly Fluorobenzoate degradation Folate biosynthesis Fructose and mannose metabolism Galactose metabolism Geraniol degradation Glutathione metabolism Glycerolipid metabolism Glycerophospholipid metabolism Glycine, serine and threonine metabolism Glycolysis / Gluconeogenesis Glyoxylate and dicarboxylate metabolism Histidine metabolism Homologous recombination Inositol phosphate metabolism Insulin resistance Limonene and pinene degradation Lipoic acid metabolism Lipopolysaccharide biosynthesis Lysine biosynthesis Lysine degradation Metabolic pathways Methane metabolism Microbial metabolism in diverse environments Mismatch repair Monobactam biosynthesis Naphthalene degradation Nicotinate and nicotinamide metabolism Nitrogen metabolism Nitrotoluene degradation Nonribosomal peptide structures Novobiocin biosynthesis Nucleotide excision repair One carbon pool by folate Oxidative phosphorylation Pantothenate and CoA biosynthesis Pentose and glucuronate interconversions Pentose phosphate pathway Peptidoglycan biosynthesis Phenylalanine metabolism Phenylalanine, tyrosine and tryptophan biosynthesis Phosphonate and phosphinate metabolism Phosphotransferase system (PTS) Polycyclic aromatic hydrocarbon degradation Polyketide sugar unit biosynthesis Porphyrin and chlorophyll metabolism Propanoate metabolism Protein export Purine metabolism Pyrimidine metabolism Pyruvate metabolism RNA degradation RNA polymerase Riboflavin metabolism Ribosome Salmonella infection Selenocompound metabolism Starch and sucrose metabolism Streptomycin biosynthesis Sulfur metabolism Sulfur relay system Taurine and hypotaurine metabolism Terpenoid backbone biosynthesis Thiamine metabolism Toluene degradation Tryptophan metabolism Two-component system Tyrosine metabolism Ubiquinone and other terpenoid-quinone biosynthesis Valine, leucine and isoleucine biosynthesis Valine, leucine and isoleucine degradation Vancomycin resistance Vitamin B6 metabolism alpha-Linolenic acid metabolism beta-Alanine metabolism beta-Lactam resistance CLUSTERS WITH	METABOLOMICS NUTRIENTS/ SUBSTRATES L-Lysine Iron supplements [parent] Acetoin [parent] ENDPRODUCTS 2,3-Butanediol [parent] Cadaverine INHIBITED BY Curcuma longa Aloe vera Plantain bananas Garlic (allicin) Pomegranate ellagitannins [parent] Sarcodiotheca gaudichaudii (red seaweed) Hyocyamine ENHANCED BY Aspartame [parent] Berberine BIOTRANSFORMS BIOTRANFORM
ANTIBIOTIC RESISTANCE Aminoglycoside (acrb) Glycylcycline (acrb) Macrolide (acrb) Beta lactam (acrb) Acriflavin (acrb) Macrolide (mpha) Chloramphenicol (cml_e1) Paromomycin (aph3ia) Neomycin (aph3ia) Kanamycin (aph3ia) Ribostamycin (aph3ia) Lividomycin (aph3ia) Gentamincin b (aph3ia) Fluoroquinolone (qnrb) Astromicin (aac3ia) Sisomicin (aac3ia) Gentamicin (aac3ia) Sulfonamide (sul1) Chloramphenicol (cml_e3) Trimethoprim (dfra19) Monobactam (bl2be_shv2) E cephalosproin (bl2be_shv2) Penicillin (bl2be_shv2) N cephalosproin (bl2be_shv2) Tobramycin (aac6ib) Netilmicin (aac6ib) Isepamicin (aac6ib) Amikacin (aac6ib) Sisomicin (aac6ib) Dibekacin (aac6ib) Cephamycin (bl2_kpc) Cephalosporin (bl2_kpc) Penicillin (bl2_kpc) Carbapenem (bl2_kpc) Bacitracin (baca) Streptomycin (aph6id) Fluoroquinolone (qnra) Cloxacillin (bl2d_oxa2) Penicillin (bl2d_oxa2) Sisomicin (aac3vi) Gentamicin (aac3vi) Chloramphenicol (cata2) Aminoglycoside (acra) Glycylcycline (acra) Macrolide (acra) Beta lactam (acra) Acriflavin (acra) Tetracycline (tetg) Cephamycin (bl1_cmy2) Cephalosporin (bl1_cmy2) Ceftriaxone (bl1_cmy2) Cefoxitin (bl1_cmy2) Carbapenem (bl1_cmy2) Ceftazidime (bl1_cmy2) T chloride (mdtp) Acriflavine (mdtp) Puromycin (mdtp) Trimethoprim (dfra21) Trimethoprim (dfra23) Kasugamycin (ksga) Fluoroquinolone (qnrs) Trimethoprim (dfra5) Monobactam (bl2be_per) E cephalosproin (bl2be_per) Penicillin (bl2be_per) N cephalosproin (bl2be_per) Monobactam (bl2be_ctxm) Cephalosporin ii (bl2be_ctxm) Cephalosporin iii (bl2be_ctxm) Penicillin (bl2be_ctxm) Cephalosporin i (bl2be_ctxm) Ceftazidime (bl2be_ctxm) Aminoglycoside (tolc) Glycylcycline (tolc) Macrolide (tolc) Beta lactam (tolc) Acriflavin (tolc) Sulfonamide (sul3) Enoxacin (mdtk) Norfloxacin (mdtk) Trimethoprim (dfra17) Cloxacillin (bl2d_oxa1) Penicillin (bl2d_oxa1) Tobramycin (aac3iia) Netilmicin (aac3iia) Sisomicin (aac3iia) Gentamicin (aac3iia) Dibekacin (aac3iia) Cephalosporin ii (bl2b_tem1) Penicillin (bl2b_tem1) Cephalosporin i (bl2b_tem1) Chloramphenicol (catb3) Trimethoprim (dfra10) Penicillin (pbp2) Trimethoprim (dfra16) Chloramphenicol (cata1) Tetracycline (tetd) T chloride (mdtn) Acriflavine (mdtn) Puromycin (mdtn) Trimethoprim (dfra7) Chloramphenicol (mdtm) Acriflavine (mdtm) Norfloxacin (mdtm) Spectinomycin (ant3ia) Streptomycin (ant3ia) Trimethoprim (dfra12) Erythromycin (erea) Tetracycline (tetc) Trimethoprim (dfra14) Tobramycin (ant2ia) Sisomicin (ant2ia) Kanamycin (ant2ia) Gentamicin (ant2ia) Dibekacin (ant2ia) Chloramphenicol (catb2) Deoxycholate (mdth) Fosfomycin (mdth) Trimethoprim (dfra15) Deoxycholate (mdtg) Fosfomycin (mdtg) Sulfonamide (sul2) Trimethoprim (dfra1) Trimethoprim (dfrb6) Macrolide (maca) Cephalosporin (bl1_acc) E penicillin (bl1_acc) Macrolide (macb) Tetracycline (teta) Tetracycline (tetb) Trimethoprim (dfra25) Tobramycin (aac6iia) Netilmicin (aac6iia) Sisomicin (aac6iia) Gentamicin (aac6iia) Dibekacin (aac6iia) Tobramycin (aac3iv) Netilmicin (aac3iv) Sisomicin (aac3iv) Gentamicin (aac3iv) Dibekacin (aac3iv) Apramycin (aac3iv) Cephalosporin (bl2b_tem) Penicillin (bl2b_tem) Carbenicillin (bl2c_pse1) Penicillin (bl2c_pse1) Streptomycin (aph33ib)	BIOFILM FORMERS	COGEM PATHOGENICITY Salmonella enterica (2)

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