Core species
Acidaminococcus sp. D21
Agathobacter rectalis
Akkermansia muciniphila
Alistipes putredinis
Alistipes shahii
Anaerotruncus colihominis
Bacteroides cellulosilyticus
Bacteroides coprocola
Bacteroides coprophilus
Bacteroides eggerthii
Bacteroides ovatus
Bacteroides plebeius
Bacteroides sp. 1_1_6
Bacteroides sp. 2_1_16
Bacteroides uniformis
Bacteroides vulgatus
Bifidobacterium adolescentis
Bifidobacterium longum
Blautia hansenii
Blautia obeum
Butyrivibrio crossotus
Catenibacterium mitsuokai
Clostridium asparagiforme
Clostridium bolteae
Clostridium leptum
Clostridium sp. L2-50
Clostridium sp. M62/1
Clostridium sp. SS2/1
Collinsella aerofaciens
Coprococcus catus
Coprococcus comes
Coprococcus eutactus
Dialister invisus
Dorea formicigenerans
Dorea longicatena
Erysipelotrichaceae
Escherichia coli
Eubacterium eligens
Eubacterium hallii
Eubacterium siraeum
Eubacterium ventriosum
Faecalibacterium prausnitzii
Faecalitalea cylindroides
Holdemanella biformis
Holdemania filiformis
Hungatella hathewayi
Oscillospira
Parabacteroides merdae
Parabacteroides sp. D13
Prevotella
Prevotella copri
Prevotella timonensis
Roseburia intestinalis
Roseburia inulinivorans
Ruminococcus bromii
Ruminococcus champanellensis
Ruminococcus lactaris
Ruminococcus sp. 5_1_39BFAA
Ruminococcus sp. SR1/5
Ruminococcus torques
Tyzzerella nexilis