Citrobacter

RANK: Genus

TAXONOMY: cellular organisms -> Bacteria -> Proteobacteria -> Gammaproteobacteria -> Enterobacteriales -> Enterobacteriaceae -> Citrobacter

OVERVIEW:

Straight rods, ~1.0 µm × 2.0–6.0 µm. Occur singly and in pairs. Conform to the general definition of the family Enterobacteriaceae. Usually not encapsulated. Gram negative. Usually motile by peritrichous flagella. Facultatively anaerobic, having both a respiratory and a fermentative type of metabolism. Grow readily on ordinary media. Colonies on nutrient agar are generally 2–4 mm in diameter, smooth, low convex, moist, translucent or opaque, and gray with a shiny surface and entire edge. Mucoid or rough forms may occur occasionally. Oxidase negative. Catalase positive. Chemoorganotrophic. Citrate can be utilized as a sole carbon source by most strains. Lysine is not decarboxylated. Alginate and pectate are not decomposed. d-glucose is fermented with the production of acid and gas. The methyl red test is positive; the Voges–Proskauer test is negative. Occur in the feces of humans and some animals; probably normal intestinal inhabitants. Sometimes pathogenic and often isolated from clinical specimens as opportunistic pathogens. Can also be found in soil, water, sewage, and food.The mol% G + C of the DNA is: 50–52 (Tm).Type species: Citrobacter freundii

This genus contains microbial species that can reside in the human gastrointestinal tract. [PMC 4262072]


Gut associated
Beta Galactosidase
Beta Glucosidase
Microbial Abundance Data: Citrobacter
Percent of total population with standard deviation [PMID: 22698087]. Percentages > 1% highlighted.
Buccal
Mucosa
Keratinized
Gingiva
Hard
Palate
Throat
Tonsils
Saliva
Stool
0.001 %
(0.004)
0.001 %
(0.006)
0.006 %
(0.038)
0.004 %
(0.029)
0.000 %
(0.001)
0.001 %
(0.007)
0.000 %
(0.006)
DESCENDANTS
INTERACTIONS
METABOLOMICS   
Substrates/ Growth Factors
  • Iron supplements [parent]
  • Acetoin [parent]

  • Metabolic Endproducts
  • 2,3-Butanediol [parent]

  • Growth Inhibited by
  • Pomegranate ellagitannins [parent]

  • Growth Enhanced By
  • Aspartame [parent]

  • Antibiotic Resistance
  • Paromomycin (aph3ia)
  • Neomycin (aph3ia)
  • Kanamycin (aph3ia)
  • Ribostamycin (aph3ia)
  • Lividomycin (aph3ia)
  • Gentamincin b (aph3ia)
  • Cloxacillin (bl2d_oxa10)
  • Penicillin (bl2d_oxa10)
  • Cephamycin (bl1_cmy2)
  • Cephalosporin (bl1_cmy2)
  • Ceftriaxone (bl1_cmy2)
  • Cefoxitin (bl1_cmy2)
  • Carbapenem (bl1_cmy2)
  • Ceftazidime (bl1_cmy2)
  • Fluoroquinolone (qnrb)
  • Cephamycin (bl3_cit)
  • Cephalosporin (bl3_cit)
  • Penicillin (bl3_cit)
  • Carbapenem (bl3_cit)
  • Tetracycline (tetd)
  • Sulfonamide (sul1)
  • Trimethoprim (dfra1)
  • Cephalosproin (bl1_ampc)
  • Trimethoprim (dfra25)
  • Monobactam (bl2be_shv2)
  • E cephalosproin (bl2be_shv2)
  • Penicillin (bl2be_shv2)
  • N cephalosproin (bl2be_shv2)
  • Monobactam (bl2be_per)
  • E cephalosproin (bl2be_per)
  • Penicillin (bl2be_per)
  • N cephalosproin (bl2be_per)
  • Trimethoprim (dfra12)
  • Spectinomycin (ant3ia)
  • Streptomycin (ant3ia)
  • Tobramycin (aac6ia)
  • Netilmicin (aac6ia)
  • Isepamicin (aac6ia)
  • Amikacin (aac6ia)
  • Sisomicin (aac6ia)
  • Dibekacin (aac6ia)
  • Monobactam (bl2be_ctxm)
  • Cephalosporin ii (bl2be_ctxm)
  • Cephalosporin iii (bl2be_ctxm)
  • Penicillin (bl2be_ctxm)
  • Cephalosporin i (bl2be_ctxm)
  • Ceftazidime (bl2be_ctxm)
  • Tobramycin (aac6ib)
  • Netilmicin (aac6ib)
  • Isepamicin (aac6ib)
  • Amikacin (aac6ib)
  • Sisomicin (aac6ib)
  • Dibekacin (aac6ib)
  • Cephamycin (bl2_kpc)
  • Cephalosporin (bl2_kpc)
  • Penicillin (bl2_kpc)
  • Carbapenem (bl2_kpc)
  • Cloxacillin (bl2d_oxa1)
  • Penicillin (bl2d_oxa1)
  • Tobramycin (ant2ia)
  • Sisomicin (ant2ia)
  • Kanamycin (ant2ia)
  • Gentamicin (ant2ia)
  • Dibekacin (ant2ia)
  • Cephalosporin (bl2b_tem)
  • Penicillin (bl2b_tem)
  • Cephalosproin (bl3_imp)
  • Cephamycin (bl3_imp)
  • Penicillin (bl3_imp)
  • Carbapenem (bl3_imp)
  • Tobramycin (aac3iia)
  • Netilmicin (aac3iia)
  • Sisomicin (aac3iia)
  • Gentamicin (aac3iia)
  • Dibekacin (aac3iia)
  • Cephalosproin (bl2b_ula)
  • Penicillin (bl2b_ula)
  • Cephalosporin ii (bl2b_tem1)
  • Penicillin (bl2b_tem1)
  • Cephalosporin i (bl2b_tem1)
  • Aminoglycoside (acra)
  • Glycylcycline (acra)
  • Macrolide (acra)
  • Beta lactam (acra)
  • Acriflavin (acra)
  • Trimethoprim (dfra16)