Datapunk Opus 23 Pro

Oribacterium

RANK: Genus

TAXONOMY: Bacteria -> Terrabacteria group -> Firmicutes -> Clostridia -> Clostridiales -> Lachnospiraceae -> Oribacterium

OVERVIEW:

Elongated ovoid rods, about 1.7–2.2 µm × 0.8–1.0 µm, usually occurring singly or in pairs and occasionally in short chains. Motile with laterally inserted flagella. Gram-stain-positive but may stain Gram-negative. Strictly anaerobic. Does not form spores. Catalase is not produced. Weakly fermentative. Abundant gas is produced in glucose broth cultures; nitrate reduction is negative; indole production is positive. Major metabolic end products in trypticase-glucose-yeast extract (TGY, see below) broth are acetic and lactic acids. Habitat: mouth, upper respiratory tract.

DNA G + C content (mol%): 42.4.

Type species: Oribacterium sinus

This genus contains microbial species that can reside in the human gastrointestinal tract. [PMC 4262072]

Microbial Abundance Data: Oribacterium (Percent of total population with standard deviation [PMID: 22698087])
Group 1				Group 2					Group 3			Group 4
Group 1 Avg	Buccal Mucosa	Keratinized Gingiva	Hard Palate	Group 2 Avg	Throat	Throat	Tonsils	Saliva	Group 3 Avg	Supragingival Plaque	Subgingival Plaque	Stool
0.354 % (0.374)	0.227 % (0.334)	0.028 % (0.099)	0.808 % (0.690)	1.652 % (1.378)	1.370 % (1.046)	1.215 % (0.930)	1.370 % (0.884)	2.653 % (2.652)	0.071 % (0.195)	0.042 % (0.099)	0.100 % (0.291)	0.001 % (0.011)

TAGS

Keystone	Core species	Type species	Pathogen	Dysbiosis associated	Flora/ commensal	Gut associated	Probiotic
Leanness	Obesity	Skin microbiome	Fecal distribution	Oral microbiome	Vaginal microbiome	Butyrate producer	Catalase producer
Histamine producer	Food fermenter	Amylolytic	Propionate producer	Nitrifying

DESCENDANTS Oribacterium asaccharolyticum Oribacterium parvum Oribacterium sinus Oribacterium sp. CM12 Oribacterium sp. OBRC12 Oribacterium sp. oral taxon 078 Oribacterium sp. oral taxon 102 Oribacterium sp. oral taxon 108 Oribacterium sp. oral taxon 372 environmental samples	INTERACTIONS ENHANCES Bacteroidales Bacteroides Odoribacter Peptococcaceae Bacteroidales Bacteroides Odoribacter Peptococcaceae Bacteroidales Bacteroides Odoribacter Peptococcaceae INHIBITS Bifidobacterium Coriobacteriales Adlercreutzia Collinsella Porphyromonas Prevotella Clostridium Clostridiales incertae sedis Clostridiales Family XIII. Incertae Sedis Blautia Coprococcus Dorea Lachnospiraceae Ruminococcaceae Ruminococcus Dialister Campylobacteraceae Erysipelotrichaceae Bifidobacterium Coriobacteriales Adlercreutzia Collinsella Porphyromonas Prevotella Clostridium Clostridiales incertae sedis Clostridiales Family XIII. Incertae Sedis Blautia Coprococcus Dorea Lachnospiraceae Ruminococcaceae Ruminococcus Dialister Campylobacteraceae Erysipelotrichaceae Bifidobacterium Coriobacteriales Adlercreutzia Collinsella Porphyromonas Prevotella Clostridium Clostridiales incertae sedis Clostridiales Family XIII. Incertae Sedis Blautia Coprococcus Dorea Lachnospiraceae Ruminococcaceae Ruminococcus Dialister Campylobacteraceae Erysipelotrichaceae INHIBITED BY Bifidobacterium Coriobacteriales Adlercreutzia Collinsella Bacteroidales Bacteroides Porphyromonadaceae Odoribacter Parabacteroides Porphyromonas Prevotella Rikenellaceae Alistipes Turicibacter Streptococcus Clostridiales Catabacteriaceae Clostridium Clostridiales incertae sedis Peptoniphilus Clostridiales Family XIII. Incertae Sedis Lachnospiraceae Blautia Lachnospiraceae Coprococcus Dorea Eubacterium Lachnobacterium Lachnospira Roseburia Lachnospiraceae Peptococcaceae Ruminococcaceae Ruminiclostridium Acetivibrio Eubacterium Faecalibacterium Oscillospira Ruminococcus Acidaminococcus Dialister Phascolarctobacterium Veillonella Rubrivivax Alcaligenaceae Oxalobacter Bilophila Desulfovibrio Campylobacteraceae Enterobacteriaceae Escherichia Erysipelotrichaceae Erysipelotrichaceae Holdemania Akkermansia	KEGG PATHWAYS CLUSTERS WITH	METABOLOMICS NUTRIENTS/ SUBSTRATES ENDPRODUCTS Butyrate [parent] Indole INHIBITED BY Flaxseed [parent] Quercetin w. Resveratrol [parent] ENHANCED BY Walnuts [parent] Proton-pump inhibitors (PPI) Saccharomyces boulardii [parent] BIOTRANSFORMS Linoleic acid (LA) [parent] Linolenic acid (CLnA) [parent] Trimethylamine [parent] BIOTRANFORM Trimethylamine-N-oxide (TMAO) [parent] Trans-11 conjugate linoleic acid (CLA) [parent] Cis-9 conjugate linoleic acid (CLA) [parent] Cis-15 conjugate linolenic acids (CLnA) [parent] Cis-9 conjugate linolenic acids (CLnA) [parent] Trans-11 conjugate linolenic acids (CLnA) [parent]
ANTIBIOTIC RESISTANCE	BIOFILM FORMERS	COGEM PATHOGENICITY Oribacterium sinus (1) Oribacterium sp oral taxon 078 (1) Oribacterium sp oral taxon 108 (1) Oribacterium sp ACB7 (1) Oribacterium sp ACB1 (1) Oribacterium sp ACB8 (1)