Bacteroides fragilis

RANK: Species

TAXONOMY: Bacteroidetes/Chlorobi group -> Bacteroidetes -> Bacteroidia -> Bacteroidales -> Bacteroidaceae -> Bacteroides -> Bacteroides fragilis

OVERVIEW:

Bacteroides fragilis is an obligately anaerobic, Gram-negative, rod-shaped bacterium. It is part of the normal flora of the human colon and is generally commensal, but can cause infection if displaced into the bloodstream or surrounding tissue following surgery, disease, or trauma. Although the B. fragilis group is the most common species found in clinical specimens, it is the least common Bacteroides present in fecal flora, comprising only 0.5% of the bacteria present in stool. Though it is gram negative, it has an altered LPS and does not cause endotoxic shock. Their pathogenicity partly results from their ability to produce capsular polysaccharide, which is protective against phagocytosis and stimulates abscess formation. Identified as constituent of vaginal microbiome. [PMID:23282177] Preliminary in vivo studies with mice suggest that probiotic therapy with B. fragilis may alleviate some of the behavioral and gastrointestinal symptoms associated with Autism Spectrum Disorder. Preliminary in vivo studies indicate that B. fragilis polysaccharide A (PSA) protects mice against experimental colitis induced by Helicobacter hepaticus. Additional in vivo research with mice has shown PSA intermediates in several markers of a healthy mammalian immune system: the levels of CD4 T cells, the balance of T-helper cells, the presence of well-defined follicular structures in the spleen, and in the inflammatory gut response to pathogens. Further studies are needed to establish if these beneficial effects also occur in the human gastrointestinal tract and immune system. It is possible that Bacteroides fragilis and Bacteroides stercosis act as keystone species in individuals consuming high fat diets due to their ability to convert bile into metabolites that are used by other members of the microbial community [PMID: 25054627] Working with lab cultures and mice, Johns Hopkins scientists have found a strain of Bacteroides fragilis which causes colon inflammation, and increases activity of a gene for the enzyme spermine oxidase in the intestine. These results suggest some strains of B. fragilis may increase the colon's exposure to hydrogen peroxide, contributing to DNA damage and the formation of tumors. Further research is needed to establish if these findings are generalizable to other strains of B. fragilis, and whether the effects observed in mice also occur in humans. A cytotoxic T lymphocyte protein 4 (CTLA4) blockade immunotherapy was shown to depend on particular Bacteroides species (Bacteroides thetaiotaomicron and Bacteroides fragilis). Together, these results indicate that the immune response to specific members of the gut microbiota may help set the stage for cancer treatment. [PMID: 26541610] Polysaccharide A (PSA) produced by Bacteroides fragilis protects animals from experimental colitis induced by Helicobacter hepaticus, a commensal bacterium with pathogenic potential. PSA can even cure established experimental colitis in animals by promoting the development of IL-10 producing regulatory T cells. High amounts of Bacteroides fragilis increase the risk of obesity development. [PMID: 18326589 ]

This species has been identified as a resident in the human gastrointestinal tract based on the phylogenetic framework of its small subunit ribosomal RNA gene sequences.[PMC 4262072]


Gut associated
Keystone
Vaginal microbiome
Fecal distribution
Flora/ commensal
Propionate producer
INTERACTIONS
Bacteroides fragilis enhances growth of
  • Bacteroidales
  • Bacteroides
  • Odoribacter
  • Peptococcaceae

  • Bacteroides fragilis inhibits growth of
  • Adlercreutzia
  • Bifidobacterium
  • Blautia
  • Campylobacteraceae
  • Clostridiales Family XIII. Incertae Sedis
  • Clostridiales incertae sedis
  • Clostridium
  • Collinsella
  • Coprococcus
  • Coriobacteriales
  • Dialister
  • Dorea
  • Erysipelotrichaceae
  • Lachnospiraceae
  • Porphyromonas
  • Prevotella
  • Ruminococcaceae
  • Ruminococcus

  • Bacteroides fragilis growth enhanced by
  • Acetivibrio
  • Acidaminococcus
  • Adlercreutzia
  • Akkermansia
  • Alcaligenaceae
  • Alistipes
  • Bacteroidales
  • Bacteroides
  • Bifidobacterium
  • Bilophila
  • Blautia
  • Campylobacteraceae
  • Catabacteriaceae
  • Clostridiales
  • Clostridiales Family XIII. Incertae Sedis
  • Clostridiales incertae sedis
  • Clostridium
  • Collinsella
  • Coprococcus
  • Coriobacteriales
  • Desulfovibrio
  • Dialister
  • Dorea
  • Enterobacteriaceae
  • Erysipelotrichaceae
  • Escherichia
  • Eubacterium
  • Faecalibacterium
  • Holdemania
  • Lachnobacterium
  • Lachnospira
  • Lachnospiraceae
  • Odoribacter
  • Oscillospira
  • Oxalobacter
  • Parabacteroides
  • Peptococcaceae
  • Peptoniphilus
  • Phascolarctobacterium
  • Porphyromonadaceae
  • Porphyromonas
  • Prevotella
  • Rikenellaceae
  • Roseburia
  • Rubrivivax
  • Ruminiclostridium
  • Ruminococcaceae
  • Ruminococcus
  • Streptococcus
  • Turicibacter
  • Veillonella
  • CLUSTERS WITH
    Group 5
  • Clostridium acetobutylicum
  • Peptoclostridium difficile
  • Colwellia psychrerythraea
  • Bifidobacterium longum
  • Neisseria gonorrhoeae
  • Bifidobacterium adolescentis
  • Cytophaga hutchinsonii
  • Lactobacillus acidophilus
  • Bacteroides thetaiotaomicron
  • Propionibacterium acnes
  • Haemophilus influenzae
  • Saccharophagus degradans
  • Pseudomonas aeruginosa
  • Porphyromonas gingivalis
  • Bacteroides fragilis
  • Staphylococcus aureus
  • Chloroflexus aurantiacus
  • Enterobacter
  • Clostridium perfringens
  • Staphylococcus epidermidis
  • Fusobacterium nucleatum
  • Gramella forsetii
  • Group 7
  • Lactobacillus brevis
  • Streptococcus gordonii
  • Streptococcus pneumoniae
  • Fusobacterium nucleatum
  • Staphylococcus epidermidis
  • Clostridium perfringens
  • Streptococcus sanguinis
  • Streptococcus agalactiae
  • Lactobacillus casei
  • Bacteroides fragilis
  • Lactobacillus plantarum
  • Staphylococcus aureus
  • Listeria innocua
  • Corynebacterium jeikeium
  • Pseudomonas aeruginosa
  • Leuconostoc mesenteroides
  • Listeria monocytogenes
  • Lactococcus lactis
  • Enterococcus faecalis
  • Staphylococcus haemolyticus
  • Lactobacillus acidophilus
  • Pediococcus pentosaceus
  • Staphylococcus saprophyticus
  • Streptococcus pyogenes
  • Lactobacillus sakei
  • Streptococcus thermophilus
  • Bacillus cereus

  • METABOLOMICS