Oral microbiome


  • Abiotrophia defectiva
  • Achromobacter xylosoxidans
  • Acinetobacter sp. oral taxon 408
  • Actinobaculum sp. oral taxon 183
  • Actinomyces cardiffensis
  • Actinomyces dentalis
  • Actinomyces georgiae
  • Actinomyces gerencseriae
  • Actinomyces graevenitzii
  • Actinomyces israelii
  • Actinomyces johnsonii
  • Actinomyces massiliensis
  • Actinomyces meyeri
  • Actinomyces naeslundii
  • Actinomyces odontolyticus
  • Actinomyces oricola
  • Actinomyces oris
  • Actinomyces radicidentis
  • Actinomyces sp. oral taxon 169
  • Actinomyces sp. oral taxon 170
  • Actinomyces sp. oral taxon 171
  • Actinomyces sp. oral taxon 172
  • Actinomyces sp. oral taxon 175
  • Actinomyces sp. oral taxon 177
  • Actinomyces sp. oral taxon 178
  • Actinomyces sp. oral taxon 180
  • Actinomyces sp. oral taxon 181
  • Actinomyces sp. oral taxon 414
  • Actinomyces sp. oral taxon 446
  • Actinomyces sp. oral taxon 448
  • Actinomyces sp. oral taxon 449
  • Actinomyces sp. oral taxon 525
  • Actinomyces sp. oral taxon 848
  • Actinomyces sp. oral taxon 877
  • Actinomyces timonensis
  • Actinomyces viscosus
  • Afipia broomeae
  • Aggregatibacter actinomycetemcomitans
  • Aggregatibacter aphrophilus
  • Aggregatibacter segnis
  • Aggregatibacter sp. oral taxon 458
  • Aggregatibacter sp. oral taxon 512
  • Aggregatibacter sp. oral taxon 513
  • Alloiococcus otitis
  • Alloprevotella rava
  • Alloprevotella tannerae
  • Alloscardovia omnicolens
  • Anaerococcus lactolyticus
  • Anaerococcus prevotii
  • Anaerococcus tetradius
  • Anaeroglobus geminatus
  • Anaerolinea thermophila
  • Anaerolineaceae
  • Aquamicrobium lusatiense
  • Arcanobacterium haemolyticum
  • Arsenicicoccus sp. oral taxon 190
  • Atopobium minutum
  • Atopobium parvulum
  • Atopobium rimae
  • Atopobium sp. oral taxon 199
  • Atopobium sp. oral taxon 416
  • Atopobium sp. oral taxon 810
  • Atopobium vaginae
  • Bacillus clausii
  • Bacteroidales
  • Bacteroides acidifaciens
  • Bacteroides heparinolyticus
  • Bacteroides pyogenes
  • Bacteroides zoogleoformans
  • Bartonella schoenbuchensis
  • Bdellovibrio sp. oral taxon 039
  • Bergeyella sp. oral taxon 319
  • Bergeyella sp. oral taxon 322
  • Bergeyella sp. oral taxon 422
  • Bifidobacteriales
  • Bifidobacterium animalis
  • Bifidobacterium breve
  • Bifidobacterium dentium
  • Bifidobacterium longum
  • Bifidobacterium scardovii
  • Bifidobacterium subtile
  • Bordetella pertussis
  • Bradyrhizobium elkanii
  • Brevundimonas diminuta
  • Bulleidia extructa
  • Butyrivibrio sp. oral taxon 094
  • Caldilinea aerophila
  • Campylobacter concisus
  • Campylobacter curvus
  • Campylobacter gracilis
  • Campylobacter rectus
  • Campylobacter showae
  • Campylobacter sp. oral taxon 044
  • Campylobacter sputorum
  • Campylobacter ureolyticus
  • Capnocytophaga gingivalis
  • Capnocytophaga granulosa
  • Capnocytophaga haemolytica
  • Capnocytophaga leadbetteri
  • Capnocytophaga ochracea
  • Capnocytophaga sp. oral taxon 323
  • Capnocytophaga sp. oral taxon 324
  • Capnocytophaga sp. oral taxon 326
  • Capnocytophaga sp. oral taxon 332
  • Capnocytophaga sp. oral taxon 334
  • Capnocytophaga sp. oral taxon 335
  • Capnocytophaga sp. oral taxon 336
  • Capnocytophaga sp. oral taxon 338
  • Capnocytophaga sp. oral taxon 380
  • Capnocytophaga sp. oral taxon 412
  • Capnocytophaga sp. oral taxon 863
  • Capnocytophaga sp. oral taxon 864
  • Capnocytophaga sp. oral taxon 878
  • Capnocytophaga sputigena
  • Cardiobacterium hominis
  • Cardiobacterium valvarum
  • Catonella morbi
  • Catonella sp. oral taxon 164
  • Catonella sp. oral taxon 451
  • Caulobacter sp. oral taxon 002
  • Centipeda periodontii
  • Comamonas testosteroni
  • Corynebacterium diphtheriae
  • Corynebacterium durum
  • Corynebacterium matruchotii
  • Corynebacterium mucifaciens
  • Corynebacterium urealyticum
  • Cronobacter sakazakii
  • Cryptobacterium curtum
  • Delftia acidovorans
  • Desulfobulbus sp. oral taxon 041
  • Desulfomicrobium orale
  • Desulfovibrio fairfieldensis
  • Desulfovibrio sp. oral taxon 040
  • Dialister invisus
  • Dialister micraerophilus
  • Dialister pneumosintes
  • Dialister sp. oral taxon 119
  • Dialister sp. oral taxon 502
  • Dietzia sp. oral taxon 368
  • Dolosigranulum pigrum
  • Eggerthella lenta
  • Eggerthia catenaformis
  • Eikenella corrodens
  • Eikenella sp. oral taxon 011
  • Enterococcus casseliflavus
  • Enterococcus durans
  • Enterococcus faecalis
  • Enterococcus italicus
  • Enterococcus saccharolyticus
  • Erysipelothrix tonsillarum
  • Erythromicrobium ramosum
  • Escherichia coli
  • Eubacteriaceae
  • Eubacterium limosum
  • Filifactor alocis
  • Finegoldia
  • Finegoldia magna
  • Flavobacteriales
  • Fretibacterium fastidiosum
  • Fusobacteria
  • Fusobacterium gonidiaformans
  • Fusobacterium naviforme
  • Fusobacterium necrophorum
  • Fusobacterium periodonticum
  • Fusobacterium sp. oral taxon 203
  • Fusobacterium sp. oral taxon 205
  • Fusobacterium sp. oral taxon 370
  • Gardnerella vaginalis
  • Gemella bergeri
  • Gemella haemolysans
  • Gemella morbillorum
  • Gemella sanguinis
  • Granulicatella adiacens
  • Granulicatella elegans
  • Haemophilus aegyptius
  • Haemophilus haemolyticus
  • Haemophilus influenzae
  • Haemophilus parainfluenzae
  • Haemophilus sp. oral taxon 035
  • Haemophilus sp. oral taxon 036
  • Helicobacter pylori
  • Johnsonella ignava
  • Johnsonella sp. oral taxon 166
  • Jonquetella anthropi
  • Kingella denitrificans
  • Kingella kingae
  • Kingella oralis
  • Kingella sp. oral taxon 012
  • Kingella sp. oral taxon 459
  • Klebsiella
  • Klebsiella pneumoniae
  • Kluyvera ascorbata
  • Kocuria sp. oral taxon 189
  • Kytococcus sedentarius
  • Lachnoanaerobaculum orale
  • Lachnoanaerobaculum saburreum
  • Lachnoanaerobaculum umeaense
  • Lactobacillus acidophilus
  • Lactobacillus brevis
  • Lactobacillus buchneri
  • Lactobacillus coleohominis
  • Lactobacillus crispatus
  • Lactobacillus fermentum
  • Lactobacillus gasseri
  • Lactobacillus iners
  • Lactobacillus jensenii
  • Lactobacillus johnsonii
  • Lactobacillus kisonensis
  • Lactobacillus oris
  • Lactobacillus panis
  • Lactobacillus parafarraginis
  • Lactobacillus pentosus
  • Lactobacillus plantarum
  • Lactobacillus rapi
  • Lactobacillus reuteri
  • Lactobacillus rhamnosus
  • Lactobacillus rogosae
  • Lactobacillus salivarius
  • Lactobacillus sp. oral taxon 052
  • Lactobacillus sp. oral taxon 461
  • Lactobacillus vaginalis
  • Lactococcus lactis
  • Lautropia mirabilis
  • Leptotrichia buccalis
  • Leptotrichia goodfellowii
  • Leptotrichia hofstadii
  • Leptotrichia hongkongensis
  • Leptotrichia shahii
  • Leptotrichia sp. 'Oral Taxon 847'
  • Leptotrichia sp. oral taxon 212
  • Leptotrichia sp. oral taxon 215
  • Leptotrichia sp. oral taxon 217
  • Leptotrichia sp. oral taxon 218
  • Leptotrichia sp. oral taxon 219
  • Leptotrichia sp. oral taxon 221
  • Leptotrichia sp. oral taxon 223
  • Leptotrichia sp. oral taxon 225
  • Leptotrichia sp. oral taxon 392
  • Leptotrichia sp. oral taxon 417
  • Leptotrichia sp. oral taxon 462
  • Leptotrichia sp. oral taxon 463
  • Leptotrichia sp. oral taxon 498
  • Leptotrichia sp. oral taxon 879
  • Leptotrichia wadei
  • Listeria monocytogenes
  • Lysinibacillus fusiformis
  • Megasphaera micronuciformis
  • Megasphaera sp. oral taxon 123
  • Mesorhizobium loti
  • Methanobrevibacter oralis
  • Methylobacteriaceae
  • Microbacterium sp. oral taxon 185
  • Microbacterium sp. oral taxon 186
  • Mitsuokella multacida
  • Mitsuokella sp. oral taxon 131
  • Mitsuokella sp. oral taxon 521
  • Mobiluncus mulieris
  • Moraxella catarrhalis
  • Moraxella osloensis
  • Mycobacterium leprae
  • Mycobacterium neoaurum
  • Mycoplasma buccale
  • Mycoplasma faucium
  • Mycoplasma fermentans
  • Mycoplasma genitalium
  • Mycoplasma hominis
  • Mycoplasma lipophilum
  • Mycoplasma orale
  • Mycoplasma pneumoniae
  • Mycoplasma salivarium
  • Neisseria bacilliformis
  • Neisseria elongata
  • Neisseria flava
  • Neisseria flavescens
  • Neisseria gonorrhoeae
  • Neisseria lactamica
  • Neisseria meningitidis
  • Neisseria mucosa
  • Neisseria oralis
  • Neisseria pharyngis
  • Neisseria polysaccharea
  • Neisseria sicca
  • Neisseria sp. oral taxon 018
  • Neisseria sp. oral taxon 020
  • Neisseria sp. oral taxon 499
  • Neisseria sp. oral taxon 523
  • Neisseria subflava
  • Neisseria weaveri
  • Nocardia
  • Ochrobactrum anthropi
  • Olsenella profusa
  • Olsenella sp. oral taxon 807
  • Olsenella sp. oral taxon 809
  • Olsenella uli
  • Oribacterium sinus
  • Oribacterium sp. oral taxon 078
  • Oribacterium sp. oral taxon 102
  • Oribacterium sp. oral taxon 108
  • Oribacterium sp. oral taxon 372
  • Ottowia sp. oral taxon 894
  • Paenibacillus glucanolyticus
  • Paenibacillus sp. oral taxon 048
  • Paenibacillus sp. oral taxon 786
  • Parascardovia denticolens
  • Parvimonas micra
  • Parvimonas sp. oral taxon 110
  • Parvimonas sp. oral taxon 393
  • Peptococcus sp. oral taxon 167
  • Peptococcus sp. oral taxon 168
  • Peptoniphilus asaccharolyticus
  • Peptoniphilus indolicus
  • Peptoniphilus lacrimalis
  • Peptoniphilus sp. oral taxon 375
  • Peptoniphilus sp. oral taxon 836
  • Peptostreptococcaceae
  • Peptostreptococcus anaerobius
  • Peptostreptococcus stomatis
  • Porphyromonadaceae
  • Porphyromonas asaccharolytica
  • Porphyromonas catoniae
  • Porphyromonas endodontalis
  • Porphyromonas gingivalis
  • Porphyromonas sp. oral taxon 275
  • Porphyromonas sp. oral taxon 277
  • Porphyromonas sp. oral taxon 278
  • Porphyromonas sp. oral taxon 279
  • Porphyromonas sp. oral taxon 284
  • Porphyromonas sp. oral taxon 395
  • Porphyromonas uenonis
  • Prevotella
  • Prevotella albensis
  • Prevotella baroniae
  • Prevotella bivia
  • Prevotella buccae
  • Prevotella buccalis
  • Prevotella dentalis
  • Prevotella denticola
  • Prevotella enoeca
  • Prevotella fusca
  • Prevotella histicola
  • Prevotella intermedia
  • Prevotella loescheii
  • Prevotella maculosa
  • Prevotella marshii
  • Prevotella melaninogenica
  • Prevotella micans
  • Prevotella multiformis
  • Prevotella multisaccharivorax
  • Prevotella nigrescens
  • Prevotella oralis
  • Prevotella oris
  • Prevotella oulorum
  • Prevotella pallens
  • Prevotella pleuritidis
  • Prevotella saccharolytica
  • Prevotella salivae
  • Prevotella scopos
  • Prevotella shahii
  • Prevotella sp. oral taxon 292
  • Prevotella sp. oral taxon 293
  • Prevotella sp. oral taxon 296
  • Prevotella sp. oral taxon 299
  • Prevotella sp. oral taxon 300
  • Prevotella sp. oral taxon 301
  • Prevotella sp. oral taxon 304
  • Prevotella sp. oral taxon 305
  • Prevotella sp. oral taxon 306
  • Prevotella sp. oral taxon 309
  • Prevotella sp. oral taxon 310
  • Prevotella sp. oral taxon 313
  • Prevotella sp. oral taxon 314
  • Prevotella sp. oral taxon 315
  • Prevotella sp. oral taxon 317
  • Prevotella sp. oral taxon 376
  • Prevotella sp. oral taxon 396
  • Prevotella sp. oral taxon 443
  • Prevotella sp. oral taxon 472
  • Prevotella sp. oral taxon 475
  • Prevotella sp. oral taxon 515
  • Prevotella sp. oral taxon 526
  • Prevotella veroralis
  • Propionibacterium acidifaciens
  • Propionibacterium acnes
  • Propionibacterium avidum
  • Propionibacterium propionicum
  • Propionibacterium sp. oral taxon 192
  • Propionibacterium sp. oral taxon 193
  • Propionibacterium sp. oral taxon 194
  • Proteus mirabilis
  • Pseudomonas otitidis
  • Pseudomonas sp. oral taxon 032
  • Pseudoramibacter alactolyticus
  • Pyramidobacter piscolens
  • Ralstonia pickettii
  • Rhodobacter capsulatus
  • Rhodocyclus sp. oral taxon 028
  • Rothia aeria
  • Rothia dentocariosa
  • Rothia mucilaginosa
  • Sanguibacter keddieii
  • Scardovia inopinata
  • Scardovia wiggsiae
  • Selenomonadales
  • Selenomonas artemidis
  • Selenomonas dianae
  • Selenomonas flueggei
  • Selenomonas infelix
  • Selenomonas noxia
  • Selenomonas sp. oral taxon 126
  • Selenomonas sp. oral taxon 133
  • Selenomonas sp. oral taxon 134
  • Selenomonas sp. oral taxon 136
  • Selenomonas sp. oral taxon 137
  • Selenomonas sp. oral taxon 138
  • Selenomonas sp. oral taxon 140
  • Selenomonas sp. oral taxon 143
  • Selenomonas sp. oral taxon 146
  • Selenomonas sp. oral taxon 149
  • Selenomonas sp. oral taxon 388
  • Selenomonas sp. oral taxon 442
  • Selenomonas sp. oral taxon 478
  • Selenomonas sp. oral taxon 479
  • Selenomonas sp. oral taxon 481
  • Selenomonas sp. oral taxon 501
  • Selenomonas sp. oral taxon 892
  • Selenomonas sputigena
  • Shuttleworthia satelles
  • Simonsiella muelleri
  • Slackia exigua
  • Sneathia sanguinegens
  • Solobacterium moorei
  • Sphingomonas sp. oral taxon 003
  • Sphingomonas sp. oral taxon 004
  • Sphingomonas sp. oral taxon 006
  • Sphingomonas sp. oral taxon 007
  • Staphylococcus aureus
  • Staphylococcus caprae
  • Staphylococcus epidermidis
  • Staphylococcus warneri
  • Stomatobaculum longum
  • Streptococcus agalactiae
  • Streptococcus australis
  • Streptococcus cristatus
  • Streptococcus downei
  • Streptococcus gordonii
  • Streptococcus infantis
  • Streptococcus mitis
  • Streptococcus mutans
  • Streptococcus oligofermentans
  • Streptococcus oralis
  • Streptococcus parasanguinis
  • Streptococcus peroris
  • Streptococcus pneumoniae
  • Streptococcus pyogenes
  • Streptococcus salivarius
  • Streptococcus sanguinis
  • Streptococcus sinensis
  • Streptococcus sobrinus
  • Streptococcus sp. oral taxon 055
  • Streptococcus sp. oral taxon 056
  • Streptococcus sp. oral taxon 057
  • Streptococcus sp. oral taxon 058
  • Streptococcus sp. oral taxon 061
  • Streptococcus sp. oral taxon 064
  • Streptococcus sp. oral taxon 065
  • Streptococcus sp. oral taxon 066
  • Streptococcus sp. oral taxon 067
  • Streptococcus sp. oral taxon 068
  • Streptococcus sp. oral taxon 069
  • Streptococcus sp. oral taxon 070
  • Streptococcus sp. oral taxon 071
  • Streptococcus sp. oral taxon 074
  • Streptococcus sp. oral taxon 423
  • Streptococcus sp. oral taxon 431
  • Streptococcus sp. oral taxon 486
  • Streptococcus sp. oral taxon 487
  • Streptococcus vestibularis
  • Tannerella forsythia
  • Tannerella sp. oral taxon 808
  • Tannerella sp. oral taxon BU063
  • Terrahaemophilus aromaticivorans
  • Treponema amylovorum
  • Treponema denticola
  • Treponema lecithinolyticum
  • Treponema maltophilum
  • Treponema medium
  • Treponema pallidum
  • Treponema parvum
  • Treponema pectinovorum
  • Treponema putidum
  • Treponema socranskii
  • Treponema sp. oral taxon 226
  • Treponema sp. oral taxon 227
  • Treponema sp. oral taxon 228
  • Treponema sp. oral taxon 230
  • Treponema sp. oral taxon 231
  • Treponema sp. oral taxon 232
  • Treponema sp. oral taxon 234
  • Treponema sp. oral taxon 235
  • Treponema sp. oral taxon 236
  • Treponema sp. oral taxon 237
  • Treponema sp. oral taxon 238
  • Treponema sp. oral taxon 239
  • Treponema sp. oral taxon 242
  • Treponema sp. oral taxon 246
  • Treponema sp. oral taxon 247
  • Treponema sp. oral taxon 249
  • Treponema sp. oral taxon 250
  • Treponema sp. oral taxon 251
  • Treponema sp. oral taxon 252
  • Treponema sp. oral taxon 253
  • Treponema sp. oral taxon 254
  • Treponema sp. oral taxon 255
  • Treponema sp. oral taxon 256
  • Treponema sp. oral taxon 257
  • Treponema sp. oral taxon 258
  • Treponema sp. oral taxon 260
  • Treponema sp. oral taxon 262
  • Treponema sp. oral taxon 263
  • Treponema sp. oral taxon 264
  • Treponema sp. oral taxon 265
  • Treponema sp. oral taxon 268
  • Treponema sp. oral taxon 270
  • Treponema sp. oral taxon 271
  • Treponema sp. oral taxon 490
  • Treponema sp. oral taxon 508
  • Treponema sp. oral taxon 517
  • Treponema sp. oral taxon 518
  • Treponema vincentii
  • Turicella otitidis
  • Variovorax paradoxus
  • Veillonella atypica
  • Veillonella denticariosi
  • Veillonella dispar
  • Veillonella parvula
  • Veillonella rogosae
  • Veillonella sp. oral taxon 780
  • Xanthomonas sp. oral taxon 037
  • [Haemophilus] ducreyi